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gttcataattatttctttgttagcatgattcatgtgggtaactgggtttttgtctttgttttcactgattctttttgcccttgtgagtagGTTATTTTCTTGTGGGACTAGCAAGGATGGCGAATCACATCTAGTGGAATGGAATGAAAGTGAAGGAGCTGTCAAGAGAACTTACCAGGGATTTCGCAAG
species | Oryza sativa |
transcript | LOC_Os03g14980.2 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: GCGCCAGGACATTGGTGCACAACAATGGCATATAGTGCAGATGGTTCAAG GTTATTTTCTTGTGGGACTATCAAGGATGGCGAATCACATCTAGTGGAATGEST: gi|58667991|gb|CK056677.1|CK056677
genomic: GCGCCAGGACATTGGTGCACAACAATGGCATATAGTGCAGATGGTTCAAGgttcataatt ... ttgtgagtagGTTATTTTCTTGTGGGACTAGCAAGGATGGCGAATCACATCTAGTGGAATG
EST: GCGCCAGGACATTGGTGCACAACAATGGCATATAGTGCAGATGGTTCAAG GTTATTTTCTTGTGGGACTAGCAAGGATGGCGAATCACATCTAGTGGAATGEST: gi|29631515|gb|CB636524.1|CB636524
genomic: GCGCCAGGACATTGGTGCACAACAATGGCATATAGTGCAGATGGTTCAAGgttcataatt ... ttgtgagtagGTTATTTTCTTGTGGGACTAGCAAGGATGGCGAATCACATCTAGTGGAATG
EST: GCGCCAGGACATTGGTGCACAACAATGGCATATAGTGCAGATGGTTCAAG GTTATTTTCTTGTGGGACTAGCAAGGATGGCGAATCACATCTAGTGGAATGEST: gi|44675806|gb|CR289240.1|CR289240
genomic: GCGCCAGGACATTGGTGCACAACAATGGCATATAGTGCAGATGGTTCAAGgttcataatt ... ttgtgagtagGTTATTTTCTTGTGGGACTAGCAAGGATGGCGAATCACATCTAGTGGAATG
EST: GGACATTGGTGCACAACAATGGCATATAGTGCAGATGGTTCAAT GTTATTTTCTTGTGGGACTAGCAATGATGGCGAATCACATCTAGTGGAATG
genomic: GGACATTGGTGCACAACAATGGCATATAGTGCAGATGGTTCAAGgttcataatt ... ttgtgagtagGTTATTTTCTTGTGGGACTAGCAAGGATGGCGAATCACATCTAGTGGAATG
gggtaactgggtttttgtctttgttttcactgattctttttgcccttgtgagtagGTTATTTTCTTGTGGGACTAGCAAGGATGGCGAATCACATCTAGTGGAATGGAATGAAAGTGAAGGAGCTGTCAAGAGAACTTACCAGGGATTTCGCAAG
cactgat putative branch site (score: 3)
ttctttttgcccttgt CT-rich tract
attcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcataattatttctttgttagcatgattcatgtgggtaactgggtttttgtctttgttttcactgattctttttgcccttgtgagtagGTTATTTTCTTGTGGGACTAGCAAGGATGGCGAATCACATCTAGTGGAATGGAATGAAAGTGAAGGAGCTGTCAAGAGAACTTACCAGGGATTTCGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA