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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggatttcaccatcctatgcagatgagctatgcaatactaattacctaatacatggaacagaatgtctgaatcttatgaaacaaattcatgttacagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTTCGTCTTGTCCAGAGGGCCAACATGACGAAGAGAATGCTCGACGGAGATA

Basic information

species Oryza sativa
transcript LOC_Os03g08550.2
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g08550.2 (Oryza sativa), 3'ss of exon 14
lower sequence: GRMZM2G153393_T02 (Zea mays), 3'ss of exon 3
gtaggatttca--ccatc--ctatgcagatgagctatgcaatactaattacctaatacatggaacagaatgtctgaatcttatgaaacaaattcatgttacagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTTCGTCTTGTCCAGAGGGCCAACATGACGAAGAGAATGCTCGACGGAGATA
|||| | |||    ||||  | ||||||   ||| ||   |||   ||       || || ||||       ||||| ||| |||| ||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||| || || ||||
gtagcagttccattcatcatccatgcaggatagccatagcatatccatc------taaatagaac-------ctgaaccttgtgaaccaaattcttattgcagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTTCGACTTGTGCAGAGGGCCAACATGACGAAGAGGATGCTTGATGGGGATA

upper sequence: LOC_Os03g08550.2 (Oryza sativa), 3'ss of exon 14
lower sequence: GRMZM2G330907_T01 (Zea mays), 3'ss of exon 15
gtagga-tttcaccatcc---tatgcagatgagctatgcaatactaattacctaatacatggaacagaatgtctgaatcttatgaaacaaattcatgttacagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTTCGTCTTGTCCAGAGGGCCAACATGACGAAGAGAATGCTCGACGGAGATA
|||||| || ||   | |   |||||||   ||  ||   | |   ||  |  |||| ||  ||       |||||| ||| |||| | |||||  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||| || ||||   
gtaggagttccattcttcatctatgcaggatagtcatagcacatccat--ctaaataaataaaa-------tctgaagcttgtgaaccgaattctcgttgcagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTTCGACTTGTGCAGAGGGCCAACATGACGAAGAGGATGCTTGATGGAGGAG

upper sequence: LOC_Os03g08550.2 (Oryza sativa), 3'ss of exon 14
lower sequence: GLYMA03G42360.1 (Glycine max), 3'ss of exon 17
gtaggatttcaccatcctatgcagatgagctatgcaatactaattacctaatacatgga-acagaatgtctg---aatcttatgaaacaaattcatgttacagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTTCGTCTTGTCCAGAGGGCCAACATGACGAAGAGAATGCTCGACGGAGATA
              | || | |||    | |    || | | |||   ||| | |||||   | ||||| ||   | || | ||     | ||   |   ||||| || ||||||||| | |||||||||||||| ||||| |||||| |||| ||  | || ||| | || |||||||  ||| |||   |     |   | 
-------------gtactgt-cagccacgttcccaaaaaattattttgtaa-atatggatggaaaatgtttgtgcattcatgtgtttttatttttgggggcagCCGGAGCCAGAATTCCGACCACCAATGTCAGAAGTGGTTCAAGCACTGGTGCGATTAGTGCAGCGAGCTAACATGAGCAAGCGAACATTTAGTAGTAGTG

upper sequence: LOC_Os03g08550.2 (Oryza sativa), 3'ss of exon 14
lower sequence: AT3G14350.3 (Arabidopsis thaliana), 3'ss of exon 16
gtaggatttcaccatcctatgcagatgagctatgcaatactaattacctaatacatggaa-cagaatgtctgaatcttatgaaacaaattcatgttacagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTTCGTCTTGTCCAGAGGGCCAACATGACGAAGAGAATGCTCGACGGAGATA
             ||| | |  | ||    |||    |  | ||  |  || | ||| || | ||||||    || || |      |||   |||||||||| || ||||| || || ||||| ||||| || ||||||||||||||||||    | || ||||| || |||||||  |||||||   | |  |  |   
----------gtaatcatctatatat----tataatgtgatgat--ctgaacaaatgaaatctgaatgt----atattgttcttttaatc--tgttacagCCGGAGCCAGAGTTTAGACCACCCATGTCTGAAGTGGTGCAAGCATTGGTTGTATTGGTGCAGAGAGCTAACATGAGCAAGAGAACTGTTGGAGTCGGCT

upper sequence: LOC_Os03g08550.2 (Oryza sativa), 3'ss of exon 14
lower sequence: Vv09s0002g00150.t01 (Vitis vinifera), 3'ss of exon 15
-------gtaggatttcaccatcctatgcagatgagct----atgcaatactaattacctaatacatggaacagaatgtctgaatcttatgaaacaaattcatgttacagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTTCGTCTTGTCCAGAGGGCCAACATGACGAAGAGAATGCTCGACGGAGATA
       ||    ||  |  |     ||||||||   |    || |  |   |  | |  |    |  || | |  | ||||| | | ||     |   |  ||   |||||||| ||||| ||| |||||||||||||||| |||||||||||| |||| || || |||||| |||| |||||||  |||||||   |       ||  
gtaaggtgtttagttaaagtaaagagtgcagatggattcatcatcctgtttcagctgctgatggtaaagatctgt-tctctgattttaatattttatcgttttgg-gcagCCTGAGCCAGAGTTCCGGCCACCAATGTCAGAAGTGGTGCAAGCACTGGTGCGGCTAGTCCAGCGGGCAAACATGAGCAAGAGAACCATTAGTAACGAAC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86495718|gb|CI138351.1|CI138351
EST:     CTGCCAAGTCTCTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAG                         CCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
genomic: CTGCCAAGTCTCTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAGgtaggatttc ... catgttacagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
EST: gi|88533487|gb|CI461054.1|CI461054
EST:     TCTCTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAG                         CCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
genomic: TCTCTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAGgtaggatttc ... catgttacagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
EST: gi|86879172|gb|CI315499.1|CI315499
EST:     CTGCCAAGTCTCTCTCCCGNTTTGCCGACGTGCTCGCTTTGTGTGTCCAG                         CCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
genomic: CTGCCAAGTCTCTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAGgtaggatttc ... catgttacagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
EST: gi|88483581|gb|CI420852.1|CI420852
EST:     CGCTTTGTGTGTCCAG                         CCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
genomic: CGCTTTGTGTGTCCAGgtaggatttc ... catgttacagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
EST: gi|86867146|gb|CI343902.1|CI343902
EST:     CTGCCAAGTCTCTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAG                         CCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
genomic: CTGCCAAGTCTCTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAGgtaggatttc ... catgttacagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
EST: gi|88969805|gb|CI383307.1|CI383307
EST:     CTGCCAAGTCTCTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAG                         CCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
genomic: CTGCCAAGTCTCTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAGgtaggatttc ... catgttacagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
EST: gi|86844468|gb|CI337739.1|CI337739
EST:     CTGCCAAGTCTCTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAG                         CCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
genomic: CTGCCAAGTCTCTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAGgtaggatttc ... catgttacagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
EST: gi|88487009|gb|CI424280.1|CI424280
EST:     TCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAG                         CCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
genomic: TCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAGgtaggatttc ... catgttacagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
EST: gi|86260505|gb|CI066378.1|CI066378
EST:     CTGCCAAGTCTCTCTCCCGGTTNGCCGACGTGCTCGCTTTGTGTGTCCAG                         CCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
genomic: CTGCCAAGTCTCTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAGgtaggatttc ... catgttacagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
EST: gi|88484497|gb|CI421768.1|CI421768
EST:     TTGCCGACGTGCTCGCTTTGTGTGTCCAG                         CCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
genomic: TTGCCGACGTGCTCGCTTTGTGTGTCCAGgtaggatttc ... catgttacagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
EST: gi|86874774|gb|CI325285.1|CI325285
EST:     CTGCCAAGTCTCTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAG                         CCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
genomic: CTGCCAAGTCTCTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAGgtaggatttc ... catgttacagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
EST: gi|88468186|gb|CI517645.1|CI517645
EST:     CTNCCAAGTCTCTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAG                         CCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
genomic: CTGCCAAGTCTCTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAGgtaggatttc ... catgttacagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
EST: gi|8857919|gb|AU095237.1|AU095237
EST:     CTGCCAAGTCTCTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAG                         CCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
genomic: CTGCCAAGTCTCTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAGgtaggatttc ... catgttacagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
EST: gi|88846425|gb|CI373193.1|CI373193
EST:     CTGCCAAGTCTCTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAGGTTACAG                   
genomic: CTGCCAAGTCTCTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGT-C------CAGgtaggatttc ... catg
EST: gi|88250969|gb|CI349199.1|CI349199
EST:     CTGCCAAGTCTCTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAG                         CCTGAACCAGAATTCAGGCCACCAATGTCAGAGTTGGTGCAAGCATTGGTT
genomic: CTGCCAAGTCTCTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAGgtaggatttc ... catgttacagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
EST: gi|88470471|gb|CI407742.1|CI407742
EST:     GGTTTGCCGACGTGCTCGCTTTGTGTGTCCAG                         CCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
genomic: GGTTTGCCGACGTGCTCGCTTTGTGTGTCCAGgtaggatttc ... catgttacagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
EST: gi|88254962|gb|CI353786.1|CI353786
EST:     CTGCCAAGTCTCTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAG                         CCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
genomic: CTGCCAAGTCTCTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAGgtaggatttc ... catgttacagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
EST: gi|88267437|gb|CI379372.1|CI379372
EST:     AAGTCTCTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAG                         CCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
genomic: AAGTCTCTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAGgtaggatttc ... catgttacagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
EST: gi|88269223|gb|CI380521.1|CI380521
EST:     GTCTCTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAG                         CCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
genomic: GTCTCTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAGgtaggatttc ... catgttacagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
EST: gi|88843273|gb|CI372173.1|CI372173
EST:     GTTTGCCGACGTGCTCGCTTTGTGTGTCCAG                         CCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
genomic: GTTTGCCGACGTGCTCGCTTTGTGTGTCCAGgtaggatttc ... catgttacagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
EST: gi|88505742|gb|CI433248.1|CI433248
EST:     CGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAG                         CCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
genomic: CGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAGgtaggatttc ... catgttacagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
EST: gi|86252666|gb|CI004002.1|CI004002
EST:     CTGCCAAGTCTCTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAG                         CCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
genomic: CTGCCAAGTCTCTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAGgtaggatttc ... catgttacagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
EST: gi|88265810|gb|CI376712.1|CI376712
EST:     TCTCTCTCCCGTTTTGCCGACGTGCTCGCTTTGTGTGTCCAG                         CCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
genomic: TCTCTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAGgtaggatttc ... catgttacagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
EST: gi|86886597|gb|CI322829.1|CI322829
EST:     GTTTGCCGACGTGCTCGCTTTGTGTGTCCAC                         CCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
genomic: GTTTGCCGACGTGCTCGCTTTGTGTGTCCAGgtaggatttc ... catgttacagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
EST: gi|88504056|gb|CI431562.1|CI431562
EST:     TTTGCCGACGTGCTCGCTTTGTGTGTCCAG                         CCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
genomic: TTTGCCGACGTGCTCGCTTTGTGTGTCCAGgtaggatttc ... catgttacagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
EST: gi|88831884|gb|CI369566.1|CI369566
EST:     CTCCCAAGTCTCTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAG                         CCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
genomic: CTGCCAAGTCTCTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAGgtaggatttc ... catgttacagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
EST: gi|86893911|gb|CI314910.1|CI314910
EST:     CTGCCAAGTCTCTCTCCCGG-TTGCCGACGTGCTCGCTTTGTGTTTCCAG                         CCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
genomic: CTGCCAAGTCTCTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAGgtaggatttc ... catgttacagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
EST: gi|88262054|gb|CI365630.1|CI365630
EST:     CTGCCAAGTCTCTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAG                         CCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
genomic: CTGCCAAGTCTCTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAGgtaggatttc ... catgttacagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
EST: gi|88220900|gb|CI218751.1|CI218751
EST:     CTGCCAAGTCTCTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAG                         CCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
genomic: CTGCCAAGTCTCTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAGgtaggatttc ... catgttacagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
EST: gi|86603943|gb|CI114717.1|CI114717
EST:     CTGCCAAGTCTCTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAG                         CCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
genomic: CTGCCAAGTCTCTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAGgtaggatttc ... catgttacagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
EST: gi|86838444|gb|CI327793.1|CI327793
EST:     CCAAGTCTCTCTCCCGGTTTGCCGACGTG-TCGCTTTGTGTGTCCAG                         CCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
genomic: CCAAGTCTCTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAGgtaggatttc ... catgttacagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
EST: gi|29624949|gb|CB629960.1|CB629960
EST:     CTGCCAAGTCTCTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAG                         CCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
genomic: CTGCCAAGTCTCTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAGgtaggatttc ... catgttacagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
EST: gi|88266591|gb|CI377493.1|CI377493
EST:     AGTCTCTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAG                         CCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
genomic: AGTCTCTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAGgtaggatttc ... catgttacagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
EST: gi|55410062|gb|CV722438.1|CV722438
EST:     CTGCCAAGTCTCTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAG                         CCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
genomic: CTGCCAAGTCTCTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAGgtaggatttc ... catgttacagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
EST: gi|88906724|gb|CI375796.1|CI375796
EST:     CTGCCAAGTCTCTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAG                         CCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
genomic: CTGCCAAGTCTCTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAGgtaggatttc ... catgttacagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
EST: gi|86825105|gb|CI358254.1|CI358254
EST:     TCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAG                         CCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
genomic: TCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAGgtaggatttc ... catgttacagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
EST: gi|29644650|gb|CB649657.1|CB649657
EST:     CTGCCAAGTCTCTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAG                         CCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
genomic: CTGCCAAGTCTCTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAGgtaggatttc ... catgttacagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
EST: gi|88270336|gb|CI385594.1|CI385594
EST:     CT-CCCAGTCTCTCTCCC-GTTTGCCGACGTGCTCGCTTTGTGTGTCCAG                         CCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
genomic: CTGCCAAGTCTCTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAGgtaggatttc ... catgttacagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
EST: gi|89191025|gb|CI392878.1|CI392878
EST:     TGCCAAGTCTCTCTCCCGGTTTGCCGAAGTGCTCAGCTTTGTGTGTCCAG                         CCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
genomic: TGCCAAGTCTCTCTCCCGGTTTGCCGACGTGCTC-GCTTTGTGTGTCCAGgtaggatttc ... catgttacagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
EST: gi|88271822|gb|CI387875.1|CI387875
EST:     CTGCCAAGTCTCTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAG                         CCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
genomic: CTGCCAAGTCTCTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAGgtaggatttc ... catgttacagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
EST: gi|88253840|gb|CI352466.1|CI352466
EST:     CTGCCAAGTCTCTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAG                         CCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
genomic: CTGCCAAGTCTCTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAGgtaggatttc ... catgttacagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
EST: gi|86862672|gb|CI331597.1|CI331597
EST:     CTGCCAAGTCTCTCTCCC-GTTTGCCGACGTGCTCGCTTTGTGTGTCCAG                         CCTGAACCACAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
genomic: CTGCCAAGTCTCTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAGgtaggatttc ... catgttacagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
EST: gi|88830607|gb|CI078051.1|CI078051
EST:     CTGCCAAGTCTCTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAG                         CCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
genomic: CTGCCAAGTCTCTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAGgtaggatttc ... catgttacagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
EST: gi|88442010|gb|CI557663.1|CI557663
EST:     CTGCCAAGTCTCTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAG                         CCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
genomic: CTGCCAAGTCTCTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAGgtaggatttc ... catgttacagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
EST: gi|86842211|gb|CI338531.1|CI338531
EST:     CTGCCAAGTCTCTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAG                         CCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
genomic: CTGCCAAGTCTCTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAGgtaggatttc ... catgttacagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
EST: gi|88486579|gb|CI423850.1|CI423850
EST:     CTCGCTTTGTGTGTCCAG                         CCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
genomic: CTCGCTTTGTGTGTCCAGgtaggatttc ... catgttacagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
EST: gi|88252144|gb|CI350572.1|CI350572
EST:     CTGCCAAGTCTCTCTCCCGGTTTCCCGACGTGCTCGCTTTGTTTGTCCAG                         CCT-AACCA-AATTCAGGCCACCAATGTCAGAGGTGGTGCAACCATTGGTT
genomic: CTGCCAAGTCTCTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAGgtaggatttc ... catgttacagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
EST: gi|86491616|gb|CI134249.1|CI134249
EST:     CTGCCAAGTCTCTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAG                         CCTGAACCAGAATTCAGGCCACCAATGACAGAGGTGGTGCAAGCATTGGTT
genomic: CTGCCAAGTCTCTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAGgtaggatttc ... catgttacagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
EST: gi|88970710|gb|CI385380.1|CI385380
EST:     CTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAG                         CCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
genomic: CTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAGgtaggatttc ... catgttacagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
EST: gi|86843997|gb|CI336698.1|CI336698
EST:     CTGCCAAGTCTCTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAG                         CCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
genomic: CTGCCAAGTCTCTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAGgtaggatttc ... catgttacagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
EST: gi|86899665|gb|CI327510.1|CI327510
EST:     CTGCCAAGTCTCTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAG                         CCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
genomic: CTGCCAAGTCTCTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAGgtaggatttc ... catgttacagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
EST: gi|88463062|gb|CI522173.1|CI522173
EST:     CTGCCAAGTCTCTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAG                         CCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
genomic: CTGCCAAGTCTCTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAGgtaggatttc ... catgttacagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
EST: gi|88970423|gb|CI383925.1|CI383925
EST:     ACGTGCTCGCTTTGTGTGTCCAG                         CCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
genomic: ACGTGCTCGCTTTGTGTGTCCAGgtaggatttc ... catgttacagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
EST: gi|86430735|gb|CI083158.1|CI083158
EST:     CTGCCAAGTCTCTCTCCCGGTTNGCCGACGTGCTCGCTTTGTGTGTCCAG                         CCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
genomic: CTGCCAAGTCTCTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAGgtaggatttc ... catgttacagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
EST: gi|86603558|gb|CI112318.1|CI112318
EST:     CTGCCAAGTCTCTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAG                         CCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
genomic: CTGCCAAGTCTCTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAGgtaggatttc ... catgttacagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
EST: gi|89172730|gb|CI022609.1|CI022609
EST:     CTGCCAAGTCTCTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAG                         CCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
genomic: CTGCCAAGTCTCTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAGgtaggatttc ... catgttacagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
EST: gi|86820884|gb|CI357627.1|CI357627
EST:     CTGCCAAGTCTCTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAG                         CCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
genomic: CTGCCAAGTCTCTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAGgtaggatttc ... catgttacagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
EST: gi|88842593|gb|CI081849.1|CI081849
EST:     CTGCCAAGTCTCTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAG                         CCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
genomic: CTGCCAAGTCTCTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAGgtaggatttc ... catgttacagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
EST: gi|8251223|gb|AU091393.1|AU091393
EST:     CTGCCAAGTCTCTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAG                         CCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
genomic: CTGCCAAGTCTCTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAGgtaggatttc ... catgttacagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
EST: gi|88276600|gb|CI397402.1|CI397402
EST:     CTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAG                         CCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
genomic: CTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAGgtaggatttc ... catgttacagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
EST: gi|89190903|gb|CI392756.1|CI392756
EST:     CTGCCAAGTCTCTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAG                         CCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
genomic: CTGCCAAGTCTCTCTCCCGGTTTGCCGACGTGCTCGCTTTGTGTGTCCAGgtaggatttc ... catgttacagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacctaatacatggaacagaatgtctgaatcttatgaaacaaattcatgttacagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTTCGTCTTGTCCAGAGGGCCAACATGACGAAGAGAATGCTCGACGGAGATA
 acctaat  putative branch site (score: 3)
                               ttatgaaacaaatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaggatttcaccatcctatgcagatgagctatgcaatactaattacctaatacatggaacagaatgtctgaatcttatgaaacaaattcatgttacagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTTCGTCTTGTCCAGAGGGCCAACATGACGAAGAGAATGCTCGACGGAGATA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT