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gtacaatataccgctattgtatgcatctccaccatttcagtatccgtatggtttgtttgcatcccaccattatcttaaaattatgagctttaatattgtctttgttgatggtatcatgtagGGGGATTGATGGCCCTGAGCTCGATTTTTGTTGTCAGCAATTCTTTACTTCTACAACTACATGGATCATTTCAGAGTACGGAAAAACAACGGGAAGATCT
species | Oryza sativa |
transcript | LOC_Os03g08070.2 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: CGGGGTGTTGCTGCCTCAATTTGATTTCGCCATGACACCATCTCTATCAG GGGGATTGATGGCCCTGAGCTCGATTTTTGTTGTCAGCAATTCTTTACTTCEST: gi|87030976|gb|CI270124.1|CI270124
genomic: CGGGGTGTTGCTGCCTCAATTTGATTTCGCCATGACACCATCTCTATCAGgtacaatata ... tatcatgtagGGGGATTGATGGCCCTGAGCTCGATTTTTGTTGTCAGCAATTCTTTACTTC
EST: CGGGGTGTTGCTGCCTCAATTTGATTTCGCCATGACACCATCTCTATCAG GGGGATTGATGGCCCTGAGCTCGATTTTTGTTGTCAGCAATTCTTTACTTCEST: gi|58611302|gb|CK039014.1|CK039014
genomic: CGGGGTGTTGCTGCCTCAATTTGATTTCGCCATGACACCATCTCTATCAGgtacaatata ... tatcatgtagGGGGATTGATGGCCCTGAGCTCGATTTTTGTTGTCAGCAATTCTTTACTTC
EST: CGGGGTGTTGCTGCCTCAATTTGATTTCGCCATGACACCATCTCTATCAG GGGGATTGATGGCCCTGAGCTCGATTTTTGTTGTCAGCAATTCTTTACTTCEST: gi|87014157|gb|CI273347.1|CI273347
genomic: CGGGGTGTTGCTGCCTCAATTTGATTTCGCCATGACACCATCTCTATCAGgtacaatata ... tatcatgtagGGGGATTGATGGCCCTGAGCTCGATTTTTGTTGTCAGCAATTCTTTACTTC
EST: CGGGTTGTTGCTGCCTCAATTTGATTTCGCCATGACACCATCTCTATCAG GGGGATTGATGGCCCTGAGCTCGATTTTTGTTGTCAGCAATTCTTTACTTCEST: gi|38478099|gb|CF962232.1|CF962232
genomic: CGGGGTGTTGCTGCCTCAATTTGATTTCGCCATGACACCATCTCTATCAGgtacaatata ... tatcatgtagGGGGATTGATGGCCCTGAGCTCGATTTTTGTTGTCAGCAATTCTTTACTTC
EST: CGGGGTGTTGCTGCCTCAATTTGATTTCGCCATGACACCATCTCTATCAG GGGGATTGATGGCCCTGAGCTCGATTTTTGTTGTCAGCAATTCTTTACTTC
genomic: CGGGGTGTTGCTGCCTCAATTTGATTTCGCCATGACACCATCTCTATCAGgtacaatata ... tatcatgtagGGGGATTGATGGCCCTGAGCTCGATTTTTGTTGTCAGCAATTCTTTACTTC
ccattatcttaaaattatgagctttaatattgtctttgttgatggtatcatgtagGGGGATTGATGGCCCTGAGCTCGATTTTTGTTGTCAGCAATTCTTTACTTCTACAACTACATGGATCATTTCAGAGTACGGAAAAACAACGGGAAGATCT
tgttgat putative branch site (score: 4)
ttaaaattatgagctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacaatataccgctattgtatgcatctccaccatttcagtatccgtatggtttgtttgcatcccaccattatcttaaaattatgagctttaatattgtctttgttgatggtatcatgtagGGGGATTGATGGCCCTGAGCTCGATTTTTGTTGTCAGCAATTCTTTACTTCTACAACTACATGGATCATTTCAGAGTACGGAAAAACAACGGGAAGATCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA