1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gtaggattctgttctctatgatattgtaactgcatagttcaagtggcattcgtgctaataaacaagaaccaccctacggcttagGTAATGGATGCTTTATCACTTTCGAAAGCAACTATGGCCAAAGTTCACCAAAATTTAGCCTGGGCTGTCGCATATAACATAGTAGCTATCCCTATTGCCG
species | Oryza sativa |
transcript | LOC_Os03g08070.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: TGTTCTATTAGGAAACAGACTTTCTCAG GTAATGGATGCTTTATCACTTTCGAAAGCAACTATGGCCAAAGTTCACCAAEST: gi|87030976|gb|CI270124.1|CI270124
genomic: TGTTCTATTAGGAAACAGACTTTCTCAGgtaggattct ... tacggcttagGTAATGGATGCTTTATCACTTTCGAAAGCAACTATGGCCAAAGTTCACCAA
EST: CTGCCTCTGACGCGGCTTCAGTTGTTCTATTAGGAAACAGACTTTCTCAG GTAATGGATGCTTTATCACTTTCGAAAGCAACTATGGCCAAAGTTCACCAAEST: gi|86477373|gb|CI120006.1|CI120006
genomic: CTGCCTCTGACGCGGCTTCAGTTGTTCTATTAGGAAACAGACTTTCTCAGgtaggattct ... tacggcttagGTAATGGATGCTTTATCACTTTCGAAAGCAACTATGGCCAAAGTTCACCAA
EST: GCTTCAGTTGTTCTATTAGGAAACAGACTTTCTCAG GTAATGGATGCTTTATCACTTTCGAAAGCAACTATGGCCAAAGTTCACCAAEST: gi|58611302|gb|CK039014.1|CK039014
genomic: GCTTCAGTTGTTCTATTAGGAAACAGACTTTCTCAGgtaggattct ... tacggcttagGTAATGGATGCTTTATCACTTTCGAAAGCAACTATGGCCAAAGTTCACCAA
EST: GACTTTCTCAG GTAATGGATGCTTTATCACTTTCGAAAGCAACTATGGCCAAAGTTCACCAAEST: gi|116875530|gb|EC366038.1|EC366038
genomic: GACTTTCTCAGgtaggattct ... tacggcttagGTAATGGATGCTTTATCACTTTCGAAAGCAACTATGGCCAAAGTTCACCAA
EST: CTGCCTCTGACGCGGCTTCAGTTGTTCTATTAGGAAACAGACTTTCTCAG GTAATGGATGCTTTATCACTTTCGAAAGCAACTATGGCCAAAGTTCACCAAEST: gi|116875017|gb|EC365525.1|EC365525
genomic: CTGCCTCTGACGCGGCTTCAGTTGTTCTATTAGGAAACAGACTTTCTCAGgtaggattct ... tacggcttagGTAATGGATGCTTTATCACTTTCGAAAGCAACTATGGCCAAAGTTCACCAA
EST: CTGCCTCTGACGCGGCTTCAGTTGTTCTATTAGGAAACAGACTTTCTCAG GTAATGGATGCTTTATCACTTTCGAAAGCAACTATGGCCAAAGTTCACCAAEST: gi|29681030|gb|CB677305.1|CB677305
genomic: CTGCCTCTGACGCGGCTTCAGTTGTTCTATTAGGAAACAGACTTTCTCAGgtaggattct ... tacggcttagGTAATGGATGCTTTATCACTTTCGAAAGCAACTATGGCCAAAGTTCACCAA
EST: CTGCCTCTGACGCGGCTTCAGTTGTTCTATTAGGAAACAGACTTTTTCAG GTAATGGATGCTTTATCACTTTCGAAAGCAACTATGGCCAAAGTTCACCAAEST: gi|29622947|gb|CB627958.1|CB627958
genomic: CTGCCTCTGACGCGGCTTCAGTTGTTCTATTAGGAAACAGACTTTCTCAGgtaggattct ... tacggcttagGTAATGGATGCTTTATCACTTTCGAAAGCAACTATGGCCAAAGTTCACCAA
EST: CTGCCTCTGACGCGGCTTCAGTTGTTCTATTAGGAAACAGACTTTCTCAG GTAATGGATGCTTTATCACTTTCGAAAGCAACTATGGCCAAAGTTCACCAAEST: gi|29662866|gb|CB659141.1|CB659141
genomic: CTGCCTCTGACGCGGCTTCAGTTGTTCTATTAGGAAACAGACTTTCTCAGgtaggattct ... tacggcttagGTAATGGATGCTTTATCACTTTCGAAAGCAACTATGGCCAAAGTTCACCAA
EST: CTGCCTCTGACGCGGCTTCAGTTGTTCTATTAGGAAACAGACTTTCTCAG GTAATGGATGCTTTATCACTTTCGAAAGCAACTATGGCCAAAGTTCACCAAEST: gi|116875544|gb|EC366052.1|EC366052
genomic: CTGCCTCTGACGCGGCTTCAGTTGTTCTATTAGGAAACAGACTTTCTCAGgtaggattct ... tacggcttagGTAATGGATGCTTTATCACTTTCGAAAGCAACTATGGCCAAAGTTCACCAA
EST: CTGCCTCTGACGCGGCTTCAGTTGTTCTATTAGGAAACAGACTTTCTCAG GTAATGGATGCTTTATCACTTTCGAAAGCAACTATGGCCAAAGTTCACCAAEST: gi|116875028|gb|EC365536.1|EC365536
genomic: CTGCCTCTGACGCGGCTTCAGTTGTTCTATTAGGAAACAGACTTTCTCAGgtaggattct ... tacggcttagGTAATGGATGCTTTATCACTTTCGAAAGCAACTATGGCCAAAGTTCACCAA
EST: CTGCCTCTGACGCGGCTTCAGTTGTTCTATTAGGAAACAGACTTTCTCAG GTAATGGATGCTTTATCACTTTCGAAAGCAACTATGGCCAAAGTTCACCAAEST: gi|87027726|gb|CI274290.1|CI274290
genomic: CTGCCTCTGACGCGGCTTCAGTTGTTCTATTAGGAAACAGACTTTCTCAGgtaggattct ... tacggcttagGTAATGGATGCTTTATCACTTTCGAAAGCAACTATGGCCAAAGTTCACCAA
EST: CTGCCTCTGACGCGGCTTCAGTTGTTCTATTAGGAAACAGACTTTCTCAG GTAATGGATGCTTTATCACTTTCGAAAGCAACTATGGCCAAAGTTCACCAA
genomic: CTGCCTCTGACGCGGCTTCAGTTGTTCTATTAGGAAACAGACTTTCTCAGgtaggattct ... tacggcttagGTAATGGATGCTTTATCACTTTCGAAAGCAACTATGGCCAAAGTTCACCAA
ctgcatagttcaagtggcattcgtgctaataaacaagaaccaccctacggcttagGTAATGGATGCTTTATCACTTTCGAAAGCAACTATGGCCAAAGTTCACCAAAATTTAGCCTGGGCTGTCGCATATAACATAGTAGCTATCCCTATTGCCG
tgctaat putative branch site (score: 2)
ccaccct putative PPT
taataaacaa TA-rich tract