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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttcttttttatgtatgtataaaagtaacaatatggcgcaggaagtgaagcatagaaactgttcatcatctattgaattgctctgacctctgagtttatatctagtagttaaccacttatcattggtataatgcagGCAAGGGCAAACAAGGTGAAACTCTTTGATGCAATGGGAACATTCTTTGCAAG

Basic information

species Oryza sativa
transcript LOC_Os03g06900.1
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g06900.1 (Oryza sativa), 3'ss of exon 14
lower sequence: GRMZM2G470438_T02 (Zea mays), 3'ss of exon 15
------------------gtaagttcttttttatgtatgtataaaagtaacaatatggc-gcaggaagtgaagcatagaaactgttcatcatctattgaattgctctgacctctgagtttatatctagtagttaaccac-----ttatcattggtataatgcagGCAAGGGCAAACAAGGTGAAACTCTTTGATGCAATGGGAACATTCTTTGCAAG
                  |||  |  |  |  |||||  ||  |  |||| | ||   |    | ||  ||| || |  ||        |  |||||  |||   |  |  ||||| | | |||   ||| ||     |     |  | ||||||   || ||||||||||  || || |  |||||| ||||||||||||| ||||||||||||||
gtaagttgtaaatttcttgtatttcatgatacatgtacatactattgtaatattaaaaccatcgcaaaagaaacaaaacaatgacattgcgactattttattatacacatttctgaatctgtatactgtaatttgattcgatggtggttattggtgctatacagGCAAGGGTGAAGAAAGCAAAACTCCTTGATGCAATGGGGACATTCTTTGCAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgacctctgagtttatatctagtagttaaccacttatcattggtataatgcagGCAAGGGCAAACAAGGTGAAACTCTTTGATGCAATGGGAACATTCTTTGCAAG
                         agttaac  putative branch site (score: 3)
             tttatatcta  TA-rich tract