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gtatgttggctacttcatcaatgcaaaaattaccacatttctgcacactagtagccactggatagtaatttagtctttgagccagtaagtatggatgacttgaatttacactaatagattttcatacctccttttcagGGGTCAAGCATGGGGCAATTCTTCAGACAGTACTTGGAACCAATCAAGCTAAATGATGCCCAT
species | Oryza sativa |
transcript | LOC_Os02g58590.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: GGCAATTTATTCGCCCGGAAGTCTGCAGAACATACAATTTTGGCGAACAT GGGTCAAGCATGGGGCAATTCTTCAGACAGTACTTGGAACCAATCAAGCTAEST: gi|218480194|gb|FG949561.1|FG949561
genomic: GGCAATTTATTCGCCCGGAAGTCTGCAGAACATACAATTTTGGCGAACATgtatgttggc ... tccttttcagGGGTCAAGCATGGGGCAATTCTTCAGACAGTACTTGGAACCAATCAAGCTA
EST: GGCAATTTATTCGCCCGGAAGTCTGCAGAACATACAATTTTGGCGAACAT GGGTCAAGCATGGGGCAATTCTTCAGACAGTACTTGGAACCAATCAAGCTAEST: gi|44665380|gb|CR278814.1|CR278814
genomic: GGCAATTTATTCGCCCGGAAGTCTGCAGAACATACAATTTTGGCGAACATgtatgttggc ... tccttttcagGGGTCAAGCATGGGGCAATTCTTCAGACAGTACTTGGAACCAATCAAGCTA
EST: ACAATTTTGGCGAAACCAT GGGTCAAGCATGGGGCAATTCTTCAGACAGTACTTGGAACCAATCAAGCTEST: gi|29628399|gb|CB633410.1|CB633410
genomic: ACAATTTTGGCG-AA-CATgtatgttggc ... tccttttcagGGGTCAAGCATGGGGCAATTCTTCAGACAGTACTTGGAACCAATCAAGCT
EST: GGCAATTTATTCGCCCGGAAGTCTGCAGAACATACAATTTTGGCGAACAT GGGTCAAGCATGGGGCAATTCTTCAGACAGTACTTGGAACCAATCAAGCTAEST: gi|29633687|gb|CB638696.1|CB638696
genomic: GGCAATTTATTCGCCCGGAAGTCTGCAGAACATACAATTTTGGCGAACATgtatgttggc ... tccttttcagGGGTCAAGCATGGGGCAATTCTTCAGACAGTACTTGGAACCAATCAAGCTA
EST: GGCAATTTATTCGCCCGGAAGTCTGCAGAACATACAATTTTGGCGAACAT GGGTCAAGCATGGGGCAATTCTTCAGACAGTACTTGGAACCAATCAAGCTAEST: gi|58688254|gb|CK076941.1|CK076941
genomic: GGCAATTTATTCGCCCGGAAGTCTGCAGAACATACAATTTTGGCGAACATgtatgttggc ... tccttttcagGGGTCAAGCATGGGGCAATTCTTCAGACAGTACTTGGAACCAATCAAGCTA
EST: GGCAATTTATTCGCCCGGAAGTCTGCAGAACATACAATTTTGGCGAACAT GGGTCAAGCATGGGGCAATTCTTCAGACAGTACTTGGAACCAATCAAGCTAEST: gi|88840918|gb|CI000880.1|CI000880
genomic: GGCAATTTATTCGCCCGGAAGTCTGCAGAACATACAATTTTGGCGAACATgtatgttggc ... tccttttcagGGGTCAAGCATGGGGCAATTCTTCAGACAGTACTTGGAACCAATCAAGCTA
EST: AGAACATACAATTTTGGCGAACAT GGGTCAAGCATGGGGCAATTCTTCAGACAGTACTTGGAACCAATCAAGCTAEST: gi|218489065|gb|FG948408.1|FG948408
genomic: AGAACATACAATTTTGGCGAACATgtatgttggc ... tccttttcagGGGTCAAGCATGGGGCAATTCTTCAGACAGTACTTGGAACCAATCAAGCTA
EST: GGCAATTTATTCGCCCGGAAGTCTGCAGAACATACAATTTTGGCGAACAT GGGTCAAGCATGGGGCAATTCTTCAGACAGTACTTGGAACCAATCAAGCTA
genomic: GGCAATTTATTCGCCCGGAAGTCTGCAGAACATACAATTTTGGCGAACATgtatgttggc ... tccttttcagGGGTCAAGCATGGGGCAATTCTTCAGACAGTACTTGGAACCAATCAAGCTA
agtaagtatggatgacttgaatttacactaatagattttcatacctccttttcagGGGTCAAGCATGGGGCAATTCTTCAGACAGTACTTGGAACCAATCAAGCTAAATGATGCCCAT
cactaat putative branch site (score: 30)
ttttcatacctccttt putative PPT
taatagattttcata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgttggctacttcatcaatgcaaaaattaccacatttctgcacactagtagccactggatagtaatttagtctttgagccagtaagtatggatgacttgaatttacactaatagattttcatacctccttttcagGGGTCAAGCATGGGGCAATTCTTCAGACAGTACTTGGAACCAATCAAGCTAAATGATGCCCAT
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