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gttgtaagtatgttctcttatgcttttgttaagttggtgagttgtaagataattattatcataatatattgttgattatgtttgtagGTTGGAAGCATTAACAGAGGCCTACCATTTAATAACGCTTTTGCACCAAAGATTCCCTTTTCATATGGAAGCAGCTGTGGCAGCTTCGGTAGCCATGGTA
species | Oryza sativa |
transcript | LOC_Os02g47410.2 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: ATCATAATCCTGGAGGAGGTCACTGGTTAGCTGCTGGTCTTTCCCCTCAG GTTGGAAGCATTAACAGAGGCCTACCATTTAATAACGCTTTTGCACCAAAGEST: gi|58689701|gb|CK078388.1|CK078388
genomic: ATCATAATCCTGGAGGAGGTCACTGGTTAGCTGCTGGTCTTTCCCCTCAGgttgtaagta ... atgtttgtagGTTGGAAGCATTAACAGAGGCCTACCATTTAATAACGCTTTTGCACCAAAG
EST: ATCATAATCCTGGAGGAGGTCACTGGTTAGCTGCTGGTCTTTCCCCTCAGG TEST: gi|58689701|gb|CK078388.1|CK078388
genomic: ATCATAATCCTGGAGGAGGTCACTGGTTAGCTGCTGGTCTTTCCCCTCA-Ggttgtaagta ... atgtttgtag-
EST: ATCATAATCCTGGAGGAGGTCACTGGTTAGCTGCTGGTCTTTCCCCTCAGG TEST: gi|58689701|gb|CK078388.1|CK078388
genomic: ATCATAATCCTGGAGGAGGTCACTGGTTAGCTGCTGGTCTTTCCCCTCA-Ggttgtaagta ... atgtttgtag-
EST: ATCATAATCCTGGAGGAGGTCACTGGTTAGCTGCTGGTCTTTCCCCTCAGG T
genomic: ATCATAATCCTGGAGGAGGTCACTGGTTAGCTGCTGGTCTTTCCCCTCA-Ggttgtaagta ... atgtttgtag-
gttggtgagttgtaagataattattatcataatatattgttgattatgtttgtagGTTGGAAGCATTAACAGAGGCCTACCATTTAATAACGCTTTTGCACCAAAGATTCCCTTTTCATATGGAAGCAGCTGTGGCAGCTTCGGTAGCCATGGTA
tgttgat putative branch site (score: 4)
taagataattattatc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgtaagtatgttctcttatgcttttgttaagttggtgagttgtaagataattattatcataatatattgttgattatgtttgtagGTTGGAAGCATTAACAGAGGCCTACCATTTAATAACGCTTTTGCACCAAAGATTCCCTTTTCATATGGAAGCAGCTGTGGCAGCTTCGGTAGCCATGGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT