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gtatctataatatactgttatatgtttcttctcacaacttgtagccaagttggtttgatgaatattttatttttatttgcagAGAACCCTGGCGACGACCGTCTTTTGCCAGTATCATGGAATCCCTGAAACCTCTAATCAGAACTCCCCATCAACTTCAAGAGGATATCAGTTAACGGTTC
species | Oryza sativa |
transcript | LOC_Os02g32610.4 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: AGTAGCGTTGATCCAAAAGTGGCGGCAATAATGGAATCCTGCTGGACAAA AGAACTCTGGCGACGACCGTCTTTTGCCAGTATCATGGAATCCCTGAAACCEST: gi|88322006|gb|CI673156.1|CI673156
genomic: AGTAGCGTTGATCCAAAAGTGGCGGCAATAATGGAATCCTGCTGGACAAAgtatctataa ... ttatttgcagAGAACCCTGGCGACGACCGTCTTTTGCCAGTATCATGGAATCCCTGAAACC
EST: AGTAGCGTTGATCCAAAAGTGGCGGCAATAATGGAATCCTGCTGGACAAA AGAACCCTGGCGACGACCGTCTTTTGCCAGTATCATGGAATCCCTGAAACCEST: gi|88550234|gb|CI480191.1|CI480191
genomic: AGTAGCGTTGATCCAAAAGTGGCGGCAATAATGGAATCCTGCTGGACAAAgtatctataa ... ttatttgcagAGAACCCTGGCGACGACCGTCTTTTGCCAGTATCATGGAATCCCTGAAACC
EST: AGTAGCGTTGATCCAAAATTGGCGGCAATAATGGAATCCTGCTGGACCAA AGAACCCTGGCGACGACCGTCTTTTGCCAGTATCATGGAATCCCTGANACCEST: gi|38480856|gb|CF964945.1|CF964945
genomic: AGTAGCGTTGATCCAAAAGTGGCGGCAATAATGGAATCCTGCTGGACAAAgtatctataa ... ttatttgcagAGAACCCTGGCGACGACCGTCTTTTGCCAGTATCATGGAATCCCTGAAACC
EST: AGTAGCGTTGATCCAAAAGTGGCGGCAATAATGGAATCGGGCTGGACAAA AGAACCCTGGCGACGACCGTCTTTTGCCAGTATCATGGAATCCCTGAAACCEST: gi|86833192|gb|CI334787.1|CI334787
genomic: AGTAGCGTTGATCCAAAAGTGGCGGCAATAATGGAATCCTGCTGGACAAAgtatctataa ... ttatttgcagAGAACCCTGGCGACGACCGTCTTTTGCCAGTATCATGGAATCCCTGAAACC
EST: AGTAGCGTTGATCCAAAAGTGGCGGCAATAATGGAATCCTGCTGGACAAA AGAACCCTGGCGACGACCGTCTTTTGCCAGTATCATGGAATCCCTGAAACCEST: gi|58689699|gb|CK078386.1|CK078386
genomic: AGTAGCGTTGATCCAAAAGTGGCGGCAATAATGGAATCCTGCTGGACAAAgtatctataa ... ttatttgcagAGAACCCTGGCGACGACCGTCTTTTGCCAGTATCATGGAATCCCTGAAACC
EST: AGTAGCGTTGATCCAAAAGTGGCGGCAATAATGGAATCCTGCTGGACAAA AGAACCCTGGCGACGACCGTCTTTTGCCAGTATCATGGAATCCCTGAAACCEST: gi|88538562|gb|CI467604.1|CI467604
genomic: AGTAGCGTTGATCCAAAAGTGGCGGCAATAATGGAATCCTGCTGGACAAAgtatctataa ... ttatttgcagAGAACCCTGGCGACGACCGTCTTTTGCCAGTATCATGGAATCCCTGAAACC
EST: AGTAGCGTTGATCCAAAAGTGGCGGCAATAATGGAATCCTGGTGGACAAA AGAACCCTGGCGACGACCGTCTTTTGCCAGTATCATGGAATCCCTGAAACCEST: gi|88511876|gb|CI439382.1|CI439382
genomic: AGTAGCGTTGATCCAAAAGTGGCGGCAATAATGGAATCCTGCTGGACAAAgtatctataa ... ttatttgcagAGAACCCTGGCGACGACCGTCTTTTGCCAGTATCATGGAATCCCTGAAACC
EST: GAATCCTGCTGGACAAA AGGAACCCTGGCGACGACCGTCTTTTGCCAGTATCATGGAATCCCTGAAACEST: gi|29631490|gb|CB636499.1|CB636499
genomic: GAATCCTGCTGGACAAAgtatctataa ... ttatttgcagA-GAACCCTGGCGACGACCGTCTTTTGCCAGTATCATGGAATCCCTGAAAC
EST: AGTAGCGTTGATCCAAAAGTGGCGGCAATAATGGAATCCTGCTGGACAAA AGAACCCTGGCGACGCCCGTCTTTTGCCAGTATCATGGAATCCCTGAAACCEST: gi|88536264|gb|CI466004.1|CI466004
genomic: AGTAGCGTTGATCCAAAAGTGGCGGCAATAATGGAATCCTGCTGGACAAAgtatctataa ... ttatttgcagAGAACCCTGGCGACGACCGTCTTTTGCCAGTATCATGGAATCCCTGAAACC
EST: AGTAGCNTTGATCCAAAAGTGGCGGCAATGATGGAATCCTGCTGGACAAA AGAACCCTGGCGACGGCCGTCTTTTGCCANTATCATGGAATCCCTGAAACCEST: gi|88555780|gb|CI486061.1|CI486061
genomic: AGTAGCGTTGATCCAAAAGTGGCGGCAATAATGGAATCCTGCTGGACAAAgtatctataa ... ttatttgcagAGAACCCTGGCGACGACCGTCTTTTGCCAGTATCATGGAATCCCTGAAACC
EST: AGTAGCGTTGATCCAAAAGTGGCGGCAATAATGGAATCCTGCTGGACAAA AGAACCCTGGCGACGACCGTCTTTTGCCAGTATCATGGAATCCCTGAAACCEST: gi|88553314|gb|CI483416.1|CI483416
genomic: AGTAGCGTTGATCCAAAAGTGGCGGCAATAATGGAATCCTGCTGGACAAAgtatctataa ... ttatttgcagAGAACCCTGGCGACGACCGTCTTTTGCCAGTATCATGGAATCCCTGAAACC
EST: TGCTGGACAGA AGAACCCTGGCGACGACCGTCTTTTGCCAGTATCATGGAATCCCTGAAACCEST: gi|88444780|gb|CI696208.1|CI696208
genomic: TGCTGGACAAAgtatctataa ... ttatttgcagAGAACCCTGGCGACGACCGTCTTTTGCCAGTATCATGGAATCCCTGAAACC
EST: AGTAGCGTTGATCCAAAAGTGGCGGCAATAATGGAATCCTGCTGGACAAA AGAACCCTGGCGACGACCGTCTTTTGCCAGTATCATGGAATCCCTGAAACCEST: gi|29679116|gb|CB675391.1|CB675391
genomic: AGTAGCGTTGATCCAAAAGTGGCGGCAATAATGGAATCCTGCTGGACAAAgtatctataa ... ttatttgcagAGAACCCTGGCGACGACCGTCTTTTGCCAGTATCATGGAATCCCTGAAACC
EST: AGTAGCGTTGATCCAAAAGTGGCGGCAATAATGGAATCCTGCTGGACAAA AGAACCCTGGCGACGACCGTCTTTTGCCAGTATCATGGAATCCCTGAAACC
genomic: AGTAGCGTTGATCCAAAAGTGGCGGCAATAATGGAATCCTGCTGGACAAAgtatctataa ... ttatttgcagAGAACCCTGGCGACGACCGTCTTTTGCCAGTATCATGGAATCCCTGAAACC
cttctcacaacttgtagccaagttggtttgatgaatattttatttttatttgcagAGAACCCTGGCGACGACCGTCTTTTGCCAGTATCATGGAATCCCTGAAACCTCTAATCAGAACTCCCCATCAACTTCAAGAGGATATCAGTTAACGGTTC
ttttatttttattt CT-rich tract
ttggtttgatgaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatctataatatactgttatatgtttcttctcacaacttgtagccaagttggtttgatgaatattttatttttatttgcagAGAACCCTGGCGACGACCGTCTTTTGCCAGTATCATGGAATCCCTGAAACCTCTAATCAGAACTCCCCATCAACTTCAAGAGGATATCAGTTAACGGTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT