1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gtttgtatctcctgttttcttcatcacacggatattttccaacttcggacgaactgaattgaacaaagtctacctgttcacttgcagGTTGTAGCAGCTGTTGGTTTTAATGGGCGAAGGCTTGAAATTCCAAGTAGCGTTGATCCAAAAGTGGCGGCAATAATGGAATCCTGCTGGACAAA
species | Oryza sativa |
transcript | LOC_Os02g32610.2 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: GGGAGCTCATGACATTGCAACAACCATGGAGTACTTTGAATCCAGCTCAG GTTGTAGCAGCTGTTGGTTTTAATGGGCGAAGGCTTGAAATTCCAAGTAGCEST: gi|29660723|gb|CB656998.1|CB656998
genomic: GGGAGCTCATGACATTGCAACAACCATGGAGTACTTTGAATCCAGCTCAGgtttgtatct ... tcacttgcagGTTGTAGCAGCTGTTGGTTTTAATGGGCGAAGGCTTGAAATTCCAAGTAGC
EST: GGGAGCTCATGACATTGCAACAACCATGGAGTACTTTGAATCCAGCTCAG GTTGTAGCAGCTGTTGGTTTTAATGGGCGAAGGCTTGAAATTCCAAGTAGCEST: gi|29639477|gb|CB644486.1|CB644486
genomic: GGGAGCTCATGACATTGCAACAACCATGGAGTACTTTGAATCCAGCTCAGgtttgtatct ... tcacttgcagGTTGTAGCAGCTGTTGGTTTTAATGGGCGAAGGCTTGAAATTCCAAGTAGC
EST: GGGAGCTCATGACATTGCAACAACCATGGAGTACTTTGAATCCAGCTCAG GTTGTAGCAGCTGTTGGTTTTAATGGGCGAAGGCTTGAAATTCCAAGTAGCEST: gi|29625152|gb|CB630163.1|CB630163
genomic: GGGAGCTCATGACATTGCAACAACCATGGAGTACTTTGAATCCAGCTCAGgtttgtatct ... tcacttgcagGTTGTAGCAGCTGTTGGTTTTAATGGGCGAAGGCTTGAAATTCCAAGTAGC
EST: GGGAGCTCATGACATTGCAACAACCATGGAGTACTTTGAATCCAGCTCAG GTTGTAGCAGCTGTTGGTTTTAATGGGCGAAGGCTTGAAATTCCAAGTAGCEST: gi|29678550|gb|CB674825.1|CB674825
genomic: GGGAGCTCATGACATTGCAACAACCATGGAGTACTTTGAATCCAGCTCAGgtttgtatct ... tcacttgcagGTTGTAGCAGCTGTTGGTTTTAATGGGCGAAGGCTTGAAATTCCAAGTAGC
EST: GGGAGCTCATGACATTGCAACAACCATGGAGTACTTTGAATCCAGCTCAG GTTGTAGCAGCTGTTGGTTTTAATGGGCGAAGGCTTGAAATTCCAAGTAGCEST: gi|86833192|gb|CI334787.1|CI334787
genomic: GGGAGCTCATGACATTGCAACAACCATGGAGTACTTTGAATCCAGCTCAGgtttgtatct ... tcacttgcagGTTGTAGCAGCTGTTGGTTTTAATGGGCGAAGGCTTGAAATTCCAAGTAGC
EST: GGGAGCTCATGACATTGCAACAACCATTGAGTACTTT-AATCCACCTCAG GTTGTAGCAGCTGTTGGTTTTAATGGGCGAAGGCGTGAAATTCCAAGTAGCEST: gi|29662085|gb|CB658360.1|CB658360
genomic: GGGAGCTCATGACATTGCAACAACCATGGAGTACTTTGAATCCAGCTCAGgtttgtatct ... tcacttgcagGTTGTAGCAGCTGTTGGTTTTAATGGGCGAAGGCTTGAAATTCCAAGTAGC
EST: GGGAGCTCATGACATTGCAACAACCATGGAGTACTTTGAATCCAGCTCAG GTTGTAGCAGCTGTTGGTTTTAATGGGCGAAGGCTTGAAATTCCAAGTAGCEST: gi|29680716|gb|CB676991.1|CB676991
genomic: GGGAGCTCATGACATTGCAACAACCATGGAGTACTTTGAATCCAGCTCAGgtttgtatct ... tcacttgcagGTTGTAGCAGCTGTTGGTTTTAATGGGCGAAGGCTTGAAATTCCAAGTAGC
EST: GGGAGCTCATGACATTGCAACAACCATGGAGTACTTTGAATCCAGCTCAG GTTGTAGCAGCTGTTGGTTTTAATGGGCGAAGGCTTGAAATTCCAAGTAGCEST: gi|58689699|gb|CK078386.1|CK078386
genomic: GGGAGCTCATGACATTGCAACAACCATGGAGTACTTTGAATCCAGCTCAGgtttgtatct ... tcacttgcagGTTGTAGCAGCTGTTGGTTTTAATGGGCGAAGGCTTGAAATTCCAAGTAGC
EST: GGGAGCTCATGACATTGCAACAACCATGGAGTACTTTGAATCCAGCTCAG GTTGTAGCAGCTGTTGGTTTTAATGGGCGAAGGCTTGAAATTCCAAGTAGCEST: gi|29665413|gb|CB661688.1|CB661688
genomic: GGGAGCTCATGACATTGCAACAACCATGGAGTACTTTGAATCCAGCTCAGgtttgtatct ... tcacttgcagGTTGTAGCAGCTGTTGGTTTTAATGGGCGAAGGCTTGAAATTCCAAGTAGC
EST: GGGAGCTCATGACATTGCAACACCCATGGAGTACTTTGAATCCAGCTCAG GTTGTAGCAGCTGTTGGTTTTAATGGGCGAAGGCTTGAAATTCCAAGTAGCEST: gi|29664340|gb|CB660615.1|CB660615
genomic: GGGAGCTCATGACATTGCAACAACCATGGAGTACTTTGAATCCAGCTCAGgtttgtatct ... tcacttgcagGTTGTAGCAGCTGTTGGTTTTAATGGGCGAAGGCTTGAAATTCCAAGTAGC
EST: GGGAGCTCATGACATTGCAACAACCATGGAGTACTTTGAATCCAGCTCAG GTTGTAGCAGCTGTTGGTTTTAATGGGCGAAGGCTTGAAATTCCAAGTAGCEST: gi|33675051|gb|CF303290.1|CF303290
genomic: GGGAGCTCATGACATTGCAACAACCATGGAGTACTTTGAATCCAGCTCAGgtttgtatct ... tcacttgcagGTTGTAGCAGCTGTTGGTTTTAATGGGCGAAGGCTTGAAATTCCAAGTAGC
EST: GGGAGCTCATGACATTGCAACAACCATGGAGTACTTTGAATCCAGCTCAG GTTGTAGCAGCTGGTTGGTTTTAATGGGCGAAGGCTTGAAATTCCAAGTAGEST: gi|29630303|gb|CB635312.1|CB635312
genomic: GGGAGCTCATGACATTGCAACAACCATGGAGTACTTTGAATCCAGCTCAGgtttgtatct ... tcacttgcagGTTGTAGCAGCTG-TTGGTTTTAATGGGCGAAGGCTTGAAATTCCAAGTAG
EST: GGGAGCTCATGACATTGCAACAACCATGGAGTACTTTGAATCCAGCTCAG GTTGTAGCAGCTGTTGGTTTTAATGGGCGAAGGCTTGAAATTCCAAGTAGCEST: gi|29631490|gb|CB636499.1|CB636499
genomic: GGGAGCTCATGACATTGCAACAACCATGGAGTACTTTGAATCCAGCTCAGgtttgtatct ... tcacttgcagGTTGTAGCAGCTGTTGGTTTTAATGGGCGAAGGCTTGAAATTCCAAGTAGC
EST: TACTTTGAATCCAGCTCAG GTTGTAGCAGCTGTTGGTTTTAATGGGCGAAGGCTTGAAATTCCAAGTAGCEST: gi|29675290|gb|CB671565.1|CB671565
genomic: TACTTTGAATCCAGCTCAGgtttgtatct ... tcacttgcagGTTGTAGCAGCTGTTGGTTTTAATGGGCGAAGGCTTGAAATTCCAAGTAGC
EST: GGGAGCTCATGACATTGCAACAACCATGGAGTACTTTGAATCCAGCTCAG GTTGTAGCAGCTGTTGGTTTTAATGGGCGAAGGCTTGAAATTCCAAGTAGCEST: gi|29672353|gb|CB668628.1|CB668628
genomic: GGGAGCTCATGACATTGCAACAACCATGGAGTACTTTGAATCCAGCTCAGgtttgtatct ... tcacttgcagGTTGTAGCAGCTGTTGGTTTTAATGGGCGAAGGCTTGAAATTCCAAGTAGC
EST: GGGAGCTCATGACATTGCAACAACCATGGAGTACTTTGAATCCAGCTCAG GTTGTAGCAGCTGTTGGTTTTAATGGGCGAAGGCTTGAAATTCCAAGTAGCEST: gi|29628356|gb|CB633367.1|CB633367
genomic: GGGAGCTCATGACATTGCAACAACCATGGAGTACTTTGAATCCAGCTCAGgtttgtatct ... tcacttgcagGTTGTAGCAGCTGTTGGTTTTAATGGGCGAAGGCTTGAAATTCCAAGTAGC
EST: GGGAGCTCATGACATTGCAACAACCATGGAGTACTTTGAATCCAGCTCAG GTTGTAGCAGCTGTTGGTTTTAATGGGCGAAGGCTTGAAATTCCAAGTAGCEST: gi|87015028|gb|CI273426.1|CI273426
genomic: GGGAGCTCATGACATTGCAACAACCATGGAGTACTTTGAATCCAGCTCAGgtttgtatct ... tcacttgcagGTTGTAGCAGCTGTTGGTTTTAATGGGCGAAGGCTTGAAATTCCAAGTAGC
EST: GGGAGCTCATGACATTGCAACAACCATGGAGTACTTTGAATCCAGCTCAG GTTGTAGCAGCTGTTTGTTTTTAATGGGCGAAGGCTTGAAATTCCAAGTAGEST: gi|58595275|gb|CF993583.1|CF993583
genomic: GGGAGCTCATGACATTGCAACAACCATGGAGTACTTTGAATCCAGCTCAGgtttgtatct ... tcacttgcagGTTGTAGCAGCTG-TTGGTTTTAATGGGCGAAGGCTTGAAATTCCAAGTAG
EST: GGGAGCTCATGACATTGCAACAACCATGGAGTACTTTGAATCCAGCTCAG GTTGTAGCAGCTGTTGGTTTTAATGGGCGAAGGCTTGAAATTCCAAGTAGC
genomic: GGGAGCTCATGACATTGCAACAACCATGGAGTACTTTGAATCCAGCTCAGgtttgtatct ... tcacttgcagGTTGTAGCAGCTGTTGGTTTTAATGGGCGAAGGCTTGAAATTCCAAGTAGC
tattttccaacttcggacgaactgaattgaacaaagtctacctgttcacttgcagGTTGTAGCAGCTGTTGGTTTTAATGGGCGAAGGCTTGAAATTCCAAGTAGCGTTGATCCAAAAGTGGCGGCAATAATGGAATCCTGCTGGACAAA
cctgttc CT-rich tract
aattgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtatctcctgttttcttcatcacacggatattttccaacttcggacgaactgaattgaacaaagtctacctgttcacttgcagGTTGTAGCAGCTGTTGGTTTTAATGGGCGAAGGCTTGAAATTCCAAGTAGCGTTGATCCAAAAGTGGCGGCAATAATGGAATCCTGCTGGACAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA