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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagccaatgtatctgtataatcatcaaagctttgtacctaatgccccctgtttctgtttaacattctttcttcttctttttccccagGAGATGCAACAATACAGAGGGAGAAACTTCTAGGTAGAAAATTTTGAACCGCTGCCATGTTTGAAAGTTGCAGCTATACCCGTCAAAGGGATGCTAACCA

Basic information

species Oryza sativa
transcript LOC_Os02g27950.1
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g27950.1 (Oryza sativa), 3'ss of exon 14
lower sequence: GRMZM2G158531_T01 (Zea mays), 3'ss of exon 7
gtaagcc-----aatgtatct-gtataatcatcaaagctttgtacctaatgccccctgtt-tctgtttaacattctttcttcttctttttccccagGAGATGCAACAATACAGAGGGAGAAACTTCTAGGTAGAAAATTTTGAACCGCTGCCATGTTTGAAAGTTGCAGCTATACCCGTCAAAGGGATGCTAACCA
|||||       ||||  ||| ||||     |  |       |  |    | |  | |   || |  ||  ||| |||    |   |||| |  |||||||||||||||||||||| ||||||||||||                                                                   
gtaagtttaaaaaatgactcttgtatgcctttgtacataccatgacattggactacagcaatcagactactattgtttgaaatatgttttgc--agGAGATGCAACAATACAGAGGAAGAAACTTCTAG-------------------------------------------------------------------

upper sequence: LOC_Os02g27950.1 (Oryza sativa), 3'ss of exon 14
lower sequence: GRMZM5G829738_T01 (Zea mays), 3'ss of exon 14
----------------gtaagccaatgtatctgtataatcatcaaagctttgtacc-taatgccccctgtttctgtttaacattctttcttcttctttt-------------tccccagGAGATGCAACAATACAGAGGGAGAAACTTCTAGGTAGAAAATTTTGAACCGCTGCCATGTTTGAAAGTTGCAGCTATACCCGTCAAAGGGATGCTAACCA--
                     |  || |  || | ||   | ||   | ||| ||  |||    |   |        | | || | || |  |  ||||             |   ||||||||||||||||||||||| |||||||| ||| || |  ||| ||||| |||  | |   || |||| || || || |||   |  |||||  | ||||  
gtaagttaaaaaaatgactgtcttatttgcctttgtacataccatgacattggactataacaatcagagcaatatagtgaaatcccttttcttgattttggttgaaatatgtttttcagGAGATGCAACAATACAGAGGAAGAAACTTTTAGATATACCATTCTGAACTGCT--CTTAGATGGAAGTCGCTGCAATCCCCACAAGTGGGATTTTGACCAGC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29677006|gb|CB673281.1|CB673281
EST:     GGCAGCAGATGATGATGGGGCAGACTCGTCCTGTTTATTATTATGCACCT                         GAGATGCAACAATACAGAGGGAGAAACTTCTAGGTAGAAAATTTTGAACCG
genomic: GGCAGCAGATGATGATGGGGCAGACTCGTCCTGTTTATTATTATGCACCTgtaagccaat ... ttttccccagGAGATGCAACAATACAGAGGGAGAAACTTCTAGGTAGAAAATTTTGAACCG
EST: gi|89173898|gb|CI041791.1|CI041791
EST:     GGCAGCAGATGATGATGGGGCAGACTCGTCCTGTTTATTATTATGCACCT                         GAGATGCAACAATACAGAGGGAGAAACTTCTAGGTAGAAAATTTTGAACCG
genomic: GGCAGCAGATGATGATGGGGCAGACTCGTCCTGTTTATTATTATGCACCTgtaagccaat ... ttttccccagGAGATGCAACAATACAGAGGGAGAAACTTCTAGGTAGAAAATTTTGAACCG
EST: gi|88840763|gb|CI080217.1|CI080217
EST:     GGCAGCAGATGATGATGGGGCAGACTCGTCCTGTTTATTATTATGCACCT                         GAGATGCAACAATACAGAGGGAGAAACTTCTAGGTAGAAAATTTTGAACCG
genomic: GGCAGCAGATGATGATGGGGCAGACTCGTCCTGTTTATTATTATGCACCTgtaagccaat ... ttttccccagGAGATGCAACAATACAGAGGGAGAAACTTCTAGGTAGAAAATTTTGAACCG
EST: gi|86491599|gb|CI134232.1|CI134232
EST:     GGCAGCAGATGATGATGGGGCAGACTCGTCCTGTTTATTATTATGCACCT                         GAGATGCAACAATACAGAGGGAGAAACTTCTAGGTAGAAAATTTTGAACCG
genomic: GGCAGCAGATGATGATGGGGCAGACTCGTCCTGTTTATTATTATGCACCTgtaagccaat ... ttttccccagGAGATGCAACAATACAGAGGGAGAAACTTCTAGGTAGAAAATTTTGAACCG
EST: gi|88264248|gb|CI368022.1|CI368022
EST:     GGCAGCAGATGATGATGGGGCAGACTCGTCCTGTTTATTATTATGCACCT                         GAGATGCAACAATACAGAGGGAGAAACTTCTAGGTAGAAAATTTTGAACCG
genomic: GGCAGCAGATGATGATGGGGCAGACTCGTCCTGTTTATTATTATGCACCTgtaagccaat ... ttttccccagGAGATGCAACAATACAGAGGGAGAAACTTCTAGGTAGAAAATTTTGAACCG
EST: gi|88524470|gb|CI450385.1|CI450385
EST:     GGCAGCANATGATGATGGGGCAGACTCGTCCTGTTTATTATTATGCACCT                         GAGATGCNACAATACAGAGGGAGAAACTTCTAGGTAGAAAATTTTGAACCG
genomic: GGCAGCAGATGATGATGGGGCAGACTCGTCCTGTTTATTATTATGCACCTgtaagccaat ... ttttccccagGAGATGCAACAATACAGAGGGAGAAACTTCTAGGTAGAAAATTTTGAACCG
EST: gi|88906657|gb|CI375729.1|CI375729
EST:     GCCACCAGATGATGATGGGGCAGACTCGTCCTGTTTATTATTATGCGCCT                         GAGATGCAACAATACAGAGGGAGAAACTTCTAGGTAGAAAATTTTGAACCC
genomic: GGCAGCAGATGATGATGGGGCAGACTCGTCCTGTTTATTATTATGCACCTgtaagccaat ... ttttccccagGAGATGCAACAATACAGAGGGAGAAACTTCTAGGTAGAAAATTTTGAACCG
EST: gi|218479918|gb|FG953241.1|FG953241
EST:     GGCAGCAGATGATGATGGGGCAGACTCGTCCTGTTTATTATTATGCACCT                         GAGATGCAACAATACAGAGGGAGAAACTTCTAGGTAGAAAATTTTGAACCG
genomic: GGCAGCAGATGATGATGGGGCAGACTCGTCCTGTTTATTATTATGCACCTgtaagccaat ... ttttccccagGAGATGCAACAATACAGAGGGAGAAACTTCTAGGTAGAAAATTTTGAACCG
EST: gi|88385012|gb|CI561668.1|CI561668
EST:     GATGATGATGGGGCAGACTCGTCCTGTTTATTATTATGCACCT                         GAGATGCAACAATACAGAGGGAGAAACTTCTAGGTAGAAAATTTTGAACCG
genomic: GATGATGATGGGGCAGACTCGTCCTGTTTATTATTATGCACCTgtaagccaat ... ttttccccagGAGATGCAACAATACAGAGGGAGAAACTTCTAGGTAGAAAATTTTGAACCG
EST: gi|117210416|gb|CT857519.1|CT857519
EST:     GGCAGCAGATGATGATGGGGCAGACTCGTCCTGTTTATTATTATGCACCT                         GAGATGCAACAATACAGAGGGAGAAACTTCTAGGTAGAAAATTTTGAACCG
genomic: GGCAGCAGATGATGATGGGGCAGACTCGTCCTGTTTATTATTATGCACCTgtaagccaat ... ttttccccagGAGATGCAACAATACAGAGGGAGAAACTTCTAGGTAGAAAATTTTGAACCG
EST: gi|86854693|gb|CI258984.1|CI258984
EST:     GGCAGCAGATGATGATGGGGCAGACTCGTCCTGTTTATTATTATGCACCT                         GAGATGCAACAATACAGAGGGAGAAACTTCTAGGTAGAAAATTTTGAACCG
genomic: GGCAGCAGATGATGATGGGGCAGACTCGTCCTGTTTATTATTATGCACCTgtaagccaat ... ttttccccagGAGATGCAACAATACAGAGGGAGAAACTTCTAGGTAGAAAATTTTGAACCG
EST: gi|88551282|gb|CI481321.1|CI481321
EST:     GACTCGTCCTGTTTATTATTATGCACCT                         GAGATGCAACAATACAGAGGGAGAAACTTGTAGGTAGAAAATTTTGAACCN
genomic: GACTCGTCCTGTTTATTATTATGCACCTgtaagccaat ... ttttccccagGAGATGCAACAATACAGAGGGAGAAACTTCTAGGTAGAAAATTTTGAACCG
EST: gi|33658430|gb|CF281043.1|CF281043
EST:     GGCAGCAGATGATGATGGGGCAGACTCGTCCTGTTTATTATTATGCACCT                         GAGATGCAACAATACAGAGGGAGAAACTTCTAGGTAGAAAATTTTGAACCG
genomic: GGCAGCAGATGATGATGGGGCAGACTCGTCCTGTTTATTATTATGCACCTgtaagccaat ... ttttccccagGAGATGCAACAATACAGAGGGAGAAACTTCTAGGTAGAAAATTTTGAACCG
EST: gi|88535263|gb|CI464055.1|CI464055
EST:     CGTCCTGTTTATTATTATGCACCT                         GAGATGCAACAATACAGAGGGAGAAACTTCTAGGTANAAAATTTTGAACCG
genomic: CGTCCTGTTTATTATTATGCACCTgtaagccaat ... ttttccccagGAGATGCAACAATACAGAGGGAGAAACTTCTAGGTAGAAAATTTTGAACCG
EST: gi|88462772|gb|CI519684.1|CI519684
EST:     TATTATGCACCT                         GAGATGCAACAATAGCAGAGGGAGAAACTTCTAGGTAGAAAATTTTGAACC
genomic: TATTATGCACCTgtaagccaat ... ttttccccagGAGATGCAACAATA-CAGAGGGAGAAACTTCTAGGTAGAAAATTTTGAACC
EST: gi|88835964|gb|CI371069.1|CI371069
EST:     GGCAGCAGATGATTATGGGGCAGACTCGTCCTGTTTATTATTATGCACCT                         GAGATGCAACAATACAGAGGGAGAAACTTCTAGGTAGAAAATTTTGAACCG
genomic: GGCAGCAGATGATGATGGGGCAGACTCGTCCTGTTTATTATTATGCACCTgtaagccaat ... ttttccccagGAGATGCAACAATACAGAGGGAGAAACTTCTAGGTAGAAAATTTTGAACCG
EST: gi|88271352|gb|CI387405.1|CI387405
EST:     GGCAGCAGATGATGATGGGCCAGACTCGTCCTGTTTATTATTATGCACCT                         GAGATGCAACAATACAGAGGGAGAAACTTCTAGGTAGAAAATTTTGAACCG
genomic: GGCAGCAGATGATGATGGGGCAGACTCGTCCTGTTTATTATTATGCACCTgtaagccaat ... ttttccccagGAGATGCAACAATACAGAGGGAGAAACTTCTAGGTAGAAAATTTTGAACCG
EST: gi|88543477|gb|CI473489.1|CI473489
EST:     GGCAGCAGATGATGATGGGGCAGACTCGTCCTGTTTATTATTATGCACCT                         GAGATGCAACAATACAGAGGGAGAAACTTCTAGGTAGAAAATTTTGAACCG
genomic: GGCAGCAGATGATGATGGGGCAGACTCGTCCTGTTTATTATTATGCACCTgtaagccaat ... ttttccccagGAGATGCAACAATACAGAGGGAGAAACTTCTAGGTAGAAAATTTTGAACCG
EST: gi|33657350|gb|CF279964.1|CF279964
EST:     GGCAGCAGATGATGATGGGGCAGACTCGTCCTGTTTATTATTATGCACCT                         GAGATGCAACAATACAGAGGGA
genomic: GGCAGCAGATGATGATGGGGCAGACTCGTCCTGTTTATTATTATGCACCTgtaagccaat ... ttttccccagGAGATGCAACAATACAGAGGGA
EST: gi|87015631|gb|CI277589.1|CI277589
EST:     GGCAGCAGATGATGATGGGGCAGACTCGTCCTGTTTATTATTATGCACCT                         GAGATGCAACAATACAGAGGGAGAAACTTCTAGGTAGAAAATTTTGAACCG
genomic: GGCAGCAGATGATGATGGGGCAGACTCGTCCTGTTTATTATTATGCACCTgtaagccaat ... ttttccccagGAGATGCAACAATACAGAGGGAGAAACTTCTAGGTAGAAAATTTTGAACCG
EST: gi|218484169|gb|FG948750.1|FG948750
EST:     GGCAGCAGATGATGATGGGGCAGACTCGTCCTGTTTATTATTATGCACCT                         GAGATGCAACAATACAGAGGGAGAAACTTCTAGGTAGAAAATTTTGAACCG
genomic: GGCAGCAGATGATGATGGGGCAGACTCGTCCTGTTTATTATTATGCACCTgtaagccaat ... ttttccccagGAGATGCAACAATACAGAGGGAGAAACTTCTAGGTAGAAAATTTTGAACCG
EST: gi|88512144|gb|CI439650.1|CI439650
EST:     CGTCCTGTTTATTATTATGCACCT                         GAGATGCAACAATACAGAGGGAGAAACTTCTAGGTAGAAAATTTTGAACCG
genomic: CGTCCTGTTTATTATTATGCACCTgtaagccaat ... ttttccccagGAGATGCAACAATACAGAGGGAGAAACTTCTAGGTAGAAAATTTTGAACCG
EST: gi|86868697|gb|CI333074.1|CI333074
EST:     GGCAGCAGATGATGATGGGGCAGACTCGTCCTGTTTATTATTATGCACCT                         GAGATGCAACAATACAGAGGGAGAAACTTCTAGGTAGAAAATTTTGAACCG
genomic: GGCAGCAGATGATGATGGGGCAGACTCGTCCTGTTTATTATTATGCACCTgtaagccaat ... ttttccccagGAGATGCAACAATACAGAGGGAGAAACTTCTAGGTAGAAAATTTTGAACCG
EST: gi|88541853|gb|CI471150.1|CI471150
EST:     GATGGGGCAGACTCGTCCTGTTTATTATTATGCACCT                         GAGATGCAACAATACAGAGGGAGAAACTTCTAGGTAGAAAATTTTGAACCG
genomic: GATGGGGCAGACTCGTCCTGTTTATTATTATGCACCTgtaagccaat ... ttttccccagGAGATGCAACAATACAGAGGGAGAAACTTCTAGGTAGAAAATTTTGAACCG
EST: gi|88298059|gb|CI556074.1|CI556074
EST:     GGCAGCAGATGATGATGGGGCAGACTCGTCCTGTTTATTATTATGCACCT                         GAGATGCAACAATACAGAGGGAGAAACTTCTAGGTAGAAAATTTTGAACCG
genomic: GGCAGCAGATGATGATGGGGCAGACTCGTCCTGTTTATTATTATGCACCTgtaagccaat ... ttttccccagGAGATGCAACAATACAGAGGGAGAAACTTCTAGGTAGAAAATTTTGAACCG
EST: gi|218485217|gb|FG951284.1|FG951284
EST:     GGCAGCAGATGATGATGGGGCAGACTCGTCCTGTTTATTATTATGCACCT                         GAGATGCAACAATACAGAGGGAGAAACTTCTAGGTAGAAAATTTTGAACCG
genomic: GGCAGCAGATGATGATGGGGCAGACTCGTCCTGTTTATTATTATGCACCTgtaagccaat ... ttttccccagGAGATGCAACAATACAGAGGGAGAAACTTCTAGGTAGAAAATTTTGAACCG
EST: gi|88441550|gb|CI554774.1|CI554774
EST:     GATGATGGGGCAGACTCGTCCTGTTTATTATTATGCACCT                         GAGATGCAACAATACAGAGGGAGAAACTTCTAGGTAGAAAATTTTGAACCG
genomic: GATGATGGGGCAGACTCGTCCTGTTTATTATTATGCACCTgtaagccaat ... ttttccccagGAGATGCAACAATACAGAGGGAGAAACTTCTAGGTAGAAAATTTTGAACCG
EST: gi|88969869|gb|CI383371.1|CI383371
EST:     GGCAGCAGATGATGATGGGCCAGACTCGTCCTGTTTATTATTATGCACCT                         GAGATGCAACAATACAGAGGGAGAAACTTCTAGGTAGAAAATTTTGAACCG
genomic: GGCAGCAGATGATGATGGGGCAGACTCGTCCTGTTTATTATTATGCACCTgtaagccaat ... ttttccccagGAGATGCAACAATACAGAGGGAGAAACTTCTAGGTAGAAAATTTTGAACCG
EST: gi|86873292|gb|CI341517.1|CI341517
EST:     GGCAGCAGATGATGATGGGGCAGACTCGTCCTGTTTATTATTATGCACCT                         GAGATGCAACAATACAGAGGGAGAAACTTCTAGGTAGAAAATTTTGAACCG
genomic: GGCAGCAGATGATGATGGGGCAGACTCGTCCTGTTTATTATTATGCACCTgtaagccaat ... ttttccccagGAGATGCAACAATACAGAGGGAGAAACTTCTAGGTAGAAAATTTTGAACCG
EST: gi|88550891|gb|CI480370.1|CI480370
EST:     GGCAGCAGATGATGATGGGGCAGACTCGTCCTGTTTATTATTATGCACCT                         GAGATGCAACAATACAGAGGGAGAAACTTCTAGGTAGAAAATTTTGAACCG
genomic: GGCAGCAGATGATGATGGGGCAGACTCGTCCTGTTTATTATTATGCACCTgtaagccaat ... ttttccccagGAGATGCAACAATACAGAGGGAGAAACTTCTAGGTAGAAAATTTTGAACCG
EST: gi|88840560|gb|CI080014.1|CI080014
EST:     GGCAGCAGATGATGATGGGGCAGACTCGTCCTGTTTATTATTATGCACCT                         GAGATGCAACAATACAGAGGGAGAAACTTCTAGGTAGAAAATTTTGAACCG
genomic: GGCAGCAGATGATGATGGGGCAGACTCGTCCTGTTTATTATTATGCACCTgtaagccaat ... ttttccccagGAGATGCAACAATACAGAGGGAGAAACTTCTAGGTAGAAAATTTTGAACCG
EST: gi|88843635|gb|CI372535.1|CI372535
EST:     GCAGACTCGTCCTGTTTATTATTATGCACCT                         GAGATGCAACAATACAGAGGGAGAAACTTCTAGGTAGAAAATTTTGAACCG
genomic: GCAGACTCGTCCTGTTTATTATTATGCACCTgtaagccaat ... ttttccccagGAGATGCAACAATACAGAGGGAGAAACTTCTAGGTAGAAAATTTTGAACCG
EST: gi|88484198|gb|CI421469.1|CI421469
EST:     GATGGGGCAGACTCGTCCTGTTTATTATTATGCACCT                         GAGATGCAACAATACAGAGGGAGAAACTTCTAGGTAGAAAATTTTGAACCG
genomic: GATGGGGCAGACTCGTCCTGTTTATTATTATGCACCTgtaagccaat ... ttttccccagGAGATGCAACAATACAGAGGGAGAAACTTCTAGGTAGAAAATTTTGAACCG
EST: gi|86895820|gb|CI316044.1|CI316044
EST:     GGCAGCAGATGATGATGGGGCAGACTCTTCCTGTTTATTATTATGCACCT                         GAGATGCAACAATACAGAGGGAGAAACTTCTAGGTAGAAAATTTTGAACCG
genomic: GGCAGCAGATGATGATGGGGCAGACTCGTCCTGTTTATTATTATGCACCTgtaagccaat ... ttttccccagGAGATGCAACAATACAGAGGGAGAAACTTCTAGGTAGAAAATTTTGAACCG
EST: gi|9864938|gb|AU100688.1|AU100688
EST:     GGCAGCAGATGATGATGGGGCAGACTCGTCCTGTTTATTATTATGCACCT                         GAGATGCAACAATACAGAGGGAGAAACTTCTAGGTAGAAAATTTTGANCCG
genomic: GGCAGCAGATGATGATGGGGCAGACTCGTCCTGTTTATTATTATGCACCTgtaagccaat ... ttttccccagGAGATGCAACAATACAGAGGGAGAAACTTCTAGGTAGAAAATTTTGAACCG
EST: gi|86522603|gb|CI162809.1|CI162809
EST:     GGCAGCAGATGATGATGGGGCAGACTCGTCCTGTTTATTATTATGCACCT                         GAGATGCAACAATACAGAGGGAGAAACTTCTAGGTAGAAAATTTTGAACCG
genomic: GGCAGCAGATGATGATGGGGCAGACTCGTCCTGTTTATTATTATGCACCTgtaagccaat ... ttttccccagGAGATGCAACAATACAGAGGGAGAAACTTCTAGGTAGAAAATTTTGAACCG
EST: gi|88476839|gb|CI414110.1|CI414110
EST:     GGCAGCAGATGATGATGGGGCAGACTCGTCCTGTTTATTATTATGCACCT                         GAGATGCAACAATACAGAGGGAGAAACTTCTAGGTAGAAAATTTTGAACCG
genomic: GGCAGCAGATGATGATGGGGCAGACTCGTCCTGTTTATTATTATGCACCTgtaagccaat ... ttttccccagGAGATGCAACAATACAGAGGGAGAAACTTCTAGGTAGAAAATTTTGAACCG
EST: gi|88996661|gb|CI389327.1|CI389327
EST:     ATGATAGGGCAGACTCGTCCTGTTTATTATTATGCACCT                         GAGATGCAACAATACAGAGGGAGAAACTTTTAGGTAGAAAATTTTGAACCG
genomic: ATGATGGGGCAGACTCGTCCTGTTTATTATTATGCACCTgtaagccaat ... ttttccccagGAGATGCAACAATACAGAGGGAGAAACTTCTAGGTAGAAAATTTTGAACCG
EST: gi|88271637|gb|CI387690.1|CI387690
EST:     GGCAGCAGATGATGATGGGGCAGACTCGTCCTGTTTATTATTATGCACCT                         GAGATGCAACAATACAGAGGGAGAAACTTCTAGGTAGGAAATTTTGAACCG
genomic: GGCAGCAGATGATGATGGGGCAGACTCGTCCTGTTTATTATTATGCACCTgtaagccaat ... ttttccccagGAGATGCAACAATACAGAGGGAGAAACTTCTAGGTAGAAAATTTTGAACCG
EST: gi|88274360|gb|CI394766.1|CI394766
EST:     GGCAGCAGATGATGATGGGGCAGACTCGTCCTGTTTATTATTATGCACCT                         GAGATGCAACAATACAGAGGGGAGAAACTTCTAGGTAGAAAATTTTGAACC
genomic: GGCAGCAGATGATGATGGGGCAGACTCGTCCTGTTTATTATTATGCACCTgtaagccaat ... ttttccccagGAGATGCAACAATACAGA-GGGAGAAACTTCTAGGTAGAAAATTTTGAACC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 67 (upstream exon), 44 (downstream exon)
Score: 3

TTGCAGTATGGGCAGCAGATGATGATGGGGCAGACTCGTCCTGTTTATTATTATGCACCTgtaagccaat ... ttttccccagGAGATGCAACAATACAGAGGGAGAAACTTCTAGGTAGAAAATTTTGAACCGCTGCCATGTTTGAAAGTTGCAGCTATACCCGTCAAAGGGATGCTAACCA




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtacctaatgccccctgtttctgtttaacattctttcttcttctttttccccagGAGATGCAACAATACAGAGGGAGAAACTTCTAGGTAGAAAATTTTGAACCGCTGCCATGTTTGAAAGTTGCAGCTATACCCGTCAAAGGGATGCTAACCA
                       gtttaac  putative branch site (score: 3)
           ccccctgtttctgttt  CT-rich tract
                        tttaacatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagccaatgtatctgtataatcatcaaagctttgtacctaatgccccctgtttctgtttaacattctttcttcttctttttccccagGAGATGCAACAATACAGAGGGAGAAACTTCTAGGTAGAAAATTTTGAACCGCTGCCATGTTTGAAAGTTGCAGCTATACCCGTCAAAGGGATGCTAACCA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT