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...tgatcattatttcaataaaatcgcatcttttgctcttcattatattttcttttcttcatgctttaagttgtaatatagtaatatcaatctgttccatcagGCTATTGAGGAAAATGGAGTAGAAGAGAGCCAAGAAGATGCTGTTGAGGTTGATGTTGAAGCTGATGGTTCGACTGATGGTGCTGTCCTTGTGAACGGAA
species | Oryza sativa |
transcript | LOC_Os02g11840.2 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: TACATCTAGAGGAGGTGCTGCCAGATGAAAATGGAGATGACACTCACGAG GCTATTGAGGAAAATGGAGTAGAAGAGAGCCAAGAAGATGCTGTTGAGGTTEST: gi|87021442|gb|CI274049.1|CI274049
genomic: TACATCTAGAGGAGGTGCTGCCAGATGAAAATGGAGATGACACTCACGAGgtatcactcc ... gttccatcagGCTATTGAGGAAAATGGAGTAGAAGAGAGCCAAGAAGATGCTGTTGAGGTT
EST: TACATCTAGAGGAGGTGCTGCCAGATGAAAATGGAGATGACACTCACGAG GCTATTGAGGAAAATGGAGTAGAAGAGAGCCAAGAAGATGCTGTTGAGGTTEST: gi|29644063|gb|CB649070.1|CB649070
genomic: TACATCTAGAGGAGGTGCTGCCAGATGAAAATGGAGATGACACTCACGAGgtatcactcc ... gttccatcagGCTATTGAGGAAAATGGAGTAGAAGAGAGCCAAGAAGATGCTGTTGAGGTT
EST: TACATCTAGAGGAGGTGCTGCCAGATGAAAATGGAGATGACACTCACGAG GCTATTGAGGAAAATGGAGTAGAAGAGAGCCAAGAAGATGCTGTTGAGGTTEST: gi|33800696|gb|CF326218.1|CF326218
genomic: TACATCTAGAGGAGGTGCTGCCAGATGAAAATGGAGATGACACTCACGAGgtatcactcc ... gttccatcagGCTATTGAGGAAAATGGAGTAGAAGAGAGCCAAGAAGATGCTGTTGAGGTT
EST: TACATCTAGAGGAGGTGCTGCCAGATGAAAATGGAGATGACACTCACGAG GCTATTGAGGAAAATGGAGTAGAAGAGAGCCAAGAAGATGCTGTTGAGGTTEST: gi|87021165|gb|CI271972.1|CI271972
genomic: TACATCTAGAGGAGGTGCTGCCAGATGAAAATGGAGATGACACTCACGAGgtatcactcc ... gttccatcagGCTATTGAGGAAAATGGAGTAGAAGAGAGCCAAGAAGATGCTGTTGAGGTT
EST: TACATCTAGAGGAGGTGCTGCCAGATGAAAATGGAGATGACACTCACGAG GCTATTGAGGAAAATGGAGTAGAAGAGAGCCAAGAAGATGCTGTTGAGGTTEST: gi|86480883|gb|CI123516.1|CI123516
genomic: TACATCTAGAGGAGGTGCTGCCAGATGAAAATGGAGATGACACTCACGAGgtatcactcc ... gttccatcagGCTATTGAGGAAAATGGAGTAGAAGAGAGCCAAGAAGATGCTGTTGAGGTT
EST: TACATCTAGAGGAGGTGCTGCCAGATGAAAATGGAGATGACACTCACGAG GCTATTGAGGAAAATGGAGTAGAAGAGAGCCAAGAAGATGCTGTTGAGGTTEST: gi|86481559|gb|CI124192.1|CI124192
genomic: TACATCTAGAGGAGGTGCTGCCAGATGAAAATGGAGATGACACTCACGAGgtatcactcc ... gttccatcagGCTATTGAGGAAAATGGAGTAGAAGAGAGCCAAGAAGATGCTGTTGAGGTT
EST: TACATCTAGAGGAGGTGCTGCCAGATGAAAATGGAGATGACACTCACGAG GCTATTGAGGAAAATGGAGTAGAAGAGAGCCAAGAAGATGCTGTTGAGGTTEST: gi|86478917|gb|CI121550.1|CI121550
genomic: TACATCTAGAGGAGGTGCTGCCAGATGAAAATGGAGATGACACTCACGAGgtatcactcc ... gttccatcagGCTATTGAGGAAAATGGAGTAGAAGAGAGCCAAGAAGATGCTGTTGAGGTT
EST: TACATCTAGAGGAGGTGCTGCCAGATGAAAATGGAGATGACACTCACGAG GCTATTGAGGAAAATGGAGTAGAAGAGAGCCAAGAAGATGCTGTTGAGGTTEST: gi|86521390|gb|CI161596.1|CI161596
genomic: TACATCTAGAGGAGGTGCTGCCAGATGAAAATGGAGATGACACTCACGAGgtatcactcc ... gttccatcagGCTATTGAGGAAAATGGAGTAGAAGAGAGCCAAGAAGATGCTGTTGAGGTT
EST: TACATCTAGAGGAGGTGCTGCCAGATGAAAATGGAGATGACACTCACGAG GCTATTGAGGAAAATGGAGTAGAAGAGAGCCAAGAAGATGCTGTTGAGGTTEST: gi|2797452|gb|AA750746.1|AA750746
genomic: TACATCTAGAGGAGGTGCTGCCAGATGAAAATGGAGATGACACTCACGAGgtatcactcc ... gttccatcagGCTATTGAGGAAAATGGAGTAGAAGAGAGCCAAGAAGATGCTGTTGAGGTT
EST: TACATCTAGAGGAGGTGCTGCTAGATGAAAATGGAGATGACACTCACGAG GCTATTGAGGAAAATGEST: gi|86477288|gb|CI119921.1|CI119921
genomic: TACATCTAGAGGAGGTGCTGCCAGATGAAAATGGAGATGACACTCACGAGgtatcactcc ... gttccatcagGCTATTGAGGAAAATG
EST: GGAGATGACACTCACGAG GCTATTGAGGAAAATGGAGTAGAAGAGAGCCAAGAAGATGCTGTTGAGGTT
genomic: GGAGATGACACTCACGAGgtatcactcc ... gttccatcagGCTATTGAGGAAAATGGAGTAGAAGAGAGCCAAGAAGATGCTGTTGAGGTT
tttcttttcttcatgctttaagttgtaatatagtaatatcaatctgttccatcagGCTATTGAGGAAAATGGAGTAGAAGAGAGCCAAGAAGATGCTGTTGAGGTTGATGTTGAAGCTGATGGTTCGACTGATGGTGCTGTCCTTGTGAACGGAA
tctgttcc CT-rich tract
tttaagttgtaatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgatcattatttcaataaaatcgcatcttttgctcttcattatattttcttttcttcatgctttaagttgtaatatagtaatatcaatctgttccatcagGCTATTGAGGAAAATGGAGTAGAAGAGAGCCAAGAAGATGCTGTTGAGGTTGATGTTGAAGCTGATGGTTCGACTGATGGTGCTGTCCTTGTGAACGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - caataaa
- - - - - - - - - - - - - cttttgc