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gtaagttacattgttattgatatttgacaaactctacaaaccattgacaactgagttctttaactggtcaacaataataacaaaagtactgtttcaccttttcagGGAATGATTCTCTTGTGGGATACTGATTCTGGACTTGCTCAGCTTGACAAGTACTTACATAGTAATGATGCTCATGTTGTTGCTGGAGCTTTGCTAGGTA
species | Oryza sativa |
transcript | LOC_Os02g05340.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: GGGAAAG-CAGCGCAGCAGCTAGCCTG GGAATGATTCTCTTGTGGGATACTGATTCTGGACTTGCTCAGCTTGACAAGEST: gi|58589708|gb|CF988016.1|CF988016
genomic: GGGAAAGCCAGCGCAGCAGCTAGCCTGgtaagttaca ... accttttcagGGAATGATTCTCTTGTGGGATACTGATTCTGGACTTGCTCAGCTTGACAAG
EST: GGTTATTCAAGAACAAGGAACATGGGAAAGCCAGCGCAGCAGCTAGGCTG GGAATGATTCTCTTGTGGGATACTGATTCTGGACTTGCTCAGCTTGACAAGEST: gi|29667414|gb|CB663689.1|CB663689
genomic: GGTTATTCAAGAACAAGGAACATGGGAAAGCCAGCGCAGCAGCTAGCCTGgtaagttaca ... accttttcagGGAATGATTCTCTTGTGGGATACTGATTCTGGACTTGCTCAGCTTGACAAG
EST: GGTTATTCAAGAACAAGGAACATGGGAAAGCCAGCGCAGCAGCTAGCCTG GGAATGATTCTCTTGTGGGATACTGATTCTGGACTTGCTCAGCTTGACAAGEST: gi|29671491|gb|CB667766.1|CB667766
genomic: GGTTATTCAAGAACAAGGAACATGGGAAAGCCAGCGCAGCAGCTAGCCTGgtaagttaca ... accttttcagGGAATGATTCTCTTGTGGGATACTGATTCTGGACTTGCTCAGCTTGACAAG
EST: GCCAGCGCAGCAGCTAGCCTG GGAATGATTCTCTTGTGGGATACTGATTCTGGACTTGCTCAGCTTGACAAGEST: gi|86823672|gb|CI258732.1|CI258732
genomic: GCCAGCGCAGCAGCTAGCCTGgtaagttaca ... accttttcagGGAATGATTCTCTTGTGGGATACTGATTCTGGACTTGCTCAGCTTGACAAG
EST: GGTTATTCAAGAACAAGGAACATGGGAAAGCCAGCGCAGCAGCTAGCCTG GGAATGATTCTCTTGTGGGATACTGATTCTGGACTTGCTCAGCTTGACAAGEST: gi|58604809|gb|CK015337.1|CK015337
genomic: GGTTATTCAAGAACAAGGAACATGGGAAAGCCAGCGCAGCAGCTAGCCTGgtaagttaca ... accttttcagGGAATGATTCTCTTGTGGGATACTGATTCTGGACTTGCTCAGCTTGACAAG
EST: GGTTATTCAAGAACAAGGAACATGGGAAAGCCAGCGCAGCAGCTAGCCTG GGAATGATTCTCTTGTGGGATACTGATTCTGGACTTGCTCAGCTTGACAAGEST: gi|58685643|gb|CK074330.1|CK074330
genomic: GGTTATTCAAGAACAAGGAACATGGGAAAGCCAGCGCAGCAGCTAGCCTGgtaagttaca ... accttttcagGGAATGATTCTCTTGTGGGATACTGATTCTGGACTTGCTCAGCTTGACAAG
EST: GGTTATTCAAGAACAAGGAACATGGGAAAGCCAGCGCAGCAGCTAGCCTG GGAATGATTCTCTTGTGGGATACTGATTCTGGACTTGCTCAGCTTGACAAGEST: gi|58605592|gb|CK033625.1|CK033625
genomic: GGTTATTCAAGAACAAGGAACATGGGAAAGCCAGCGCAGCAGCTAGCCTGgtaagttaca ... accttttcagGGAATGATTCTCTTGTGGGATACTGATTCTGGACTTGCTCAGCTTGACAAG
EST: GGTTATTCAAGAACAAGGAACATGGGAAAGCCAGCGCAGCAGCTAGCCTG GGAATGATTCTCTTGTGGGATACTGATTCTGGACTTGCTCAGCTTGACAAGEST: gi|29634005|gb|CB639014.1|CB639014
genomic: GGTTATTCAAGAACAAGGAACATGGGAAAGCCAGCGCAGCAGCTAGCCTGgtaagttaca ... accttttcagGGAATGATTCTCTTGTGGGATACTGATTCTGGACTTGCTCAGCTTGACAAG
EST: GGTTATTCAAGAACAAGGAACATGGGAAAGCCAGCGCAGCAGCTAGCCTG GGAATGATTCTCTTGTGGGATACTGATTCTGGACTTGCTCAGCTTGACAAGEST: gi|58681049|gb|CK069736.1|CK069736
genomic: GGTTATTCAAGAACAAGGAACATGGGAAAGCCAGCGCAGCAGCTAGCCTGgtaagttaca ... accttttcagGGAATGATTCTCTTGTGGGATACTGATTCTGGACTTGCTCAGCTTGACAAG
EST: GGTTATTCAAGAACAAAGAACATGGGAAAGCCAGCGCAGCAGCTAGCCTG TGAATGATTCTCTTGTGGGATACTGATTCTGGACTTGCTCAGCTTGACAAG
genomic: GGTTATTCAAGAACAAGGAACATGGGAAAGCCAGCGCAGCAGCTAGCCTGgtaagttaca ... accttttcagGGAATGATTCTCTTGTGGGATACTGATTCTGGACTTGCTCAGCTTGACAAG
ctgagttctttaactggtcaacaataataacaaaagtactgtttcaccttttcagGGAATGATTCTCTTGTGGGATACTGATTCTGGACTTGCTCAGCTTGACAAGTACTTACATAGTAATGATGCTCATGTTGTTGCTGGAGCTTTGCTAGGTA
taataac putative branch site (score: 19)
ctgtttcaccttttc putative PPT
aacaataataacaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttacattgttattgatatttgacaaactctacaaaccattgacaactgagttctttaactggtcaacaataataacaaaagtactgtttcaccttttcagGGAATGATTCTCTTGTGGGATACTGATTCTGGACTTGCTCAGCTTGACAAGTACTTACATAGTAATGATGCTCATGTTGTTGCTGGAGCTTTGCTAGGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT