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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgttgcctaatcacctttgttctttggttttgttttccaccaccttttataagtaatatatgatgatacgcatatattttgttatgattaaacattgtgcctccctttgcagTCCCTAGCATATTTCCCATTTGCAATTGCAAATGCGCTGACTGCACGGCTTGATGATGG

Basic information

species Oryza sativa
transcript LOC_Os02g02750.1
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g02750.1 (Oryza sativa), 3'ss of exon 14
lower sequence: GRMZM2G466281_T03 (Zea mays), 3'ss of exon 1
gttgttgcctaatcacctttgttctttggttttgttttccaccaccttttataagtaatatatgatgatacgcatatattttgttatgattaaacattgtgcctccctttgcagTCCCTAGCATATTTCCCATTTGCAATTGCAAATGCGCTGACTGCACGGCTTGATGATGG
                    || |||   |        | | ||   ||| |   |  | |   |   | | ||| |||    |||  |  |||   | |   ||| | | |||||||| || ||||| ||||||||||||||||| ||| ||||||| ||||||||||||||
--------------------gtacttgcttggaaagcccaatcattctttgttctt--ttttacaccgtcctcatttatgaccttactaaaaaatcgtatttatccttctacagTCCCTTGCGTATTTTCCATTTGCAATTGCAAACGCGTTGACTGCCCGGCTTGATGATGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86497511|gb|CI140144.1|CI140144
EST:     TGGCTCACTTAGGTGATGAGCCCAAAGGTCTGAAGACAGGGATGTGCATG                         TCCCTAGCATATTTCCCATTTGCAATTGCAAATGCGCTGACTGCACGGCTT
genomic: TGGCTCACTTATGTGATGAGCCCAAAGGTCTGAAGACAGGGATGTGCATGgttgttgcct ... ccctttgcagTCCCTAGCATATTTCCCATTTGCAATTGCAAATGCGCTGACTGCACGGCTT
EST: gi|33803550|gb|CF327650.1|CF327650
EST:     TGGCTCACTTATGTGATGAGCCCAAAGGTCTGAAGACAGGGATGTGCATG                         TCCCTAGCATATTTCCCATTTGCAATTGCAAATGCGCTGACTGCACGGCTT
genomic: TGGCTCACTTATGTGATGAGCCCAAAGGTCTGAAGACAGGGATGTGCATGgttgttgcct ... ccctttgcagTCCCTAGCATATTTCCCATTTGCAATTGCAAATGCGCTGACTGCACGGCTT
EST: gi|88691614|gb|CI733692.1|CI733692
EST:     TGGCTCACTTATGTGATGAGCCCAAAGGTCTGAAGACAGGGATGTGCATG                         TCCCTAGCATATTTCCCATTTGCAATTGCAAATGCGCTGACTGCACGGCTT
genomic: TGGCTCACTTATGTGATGAGCCCAAAGGTCTGAAGACAGGGATGTGCATGgttgttgcct ... ccctttgcagTCCCTAGCATATTTCCCATTTGCAATTGCAAATGCGCTGACTGCACGGCTT
EST: gi|33803552|gb|CF327651.1|CF327651
EST:     TCACTTATGTGATGAGCCCAAAGGTCTGAAGACAGGGATGTGCATG                         TCCCTAGCATATTTCCCATTTGCAATTGCAAATGCGCTGACTGCACGGCTT
genomic: TCACTTATGTGATGAGCCCAAAGGTCTGAAGACAGGGATGTGCATGgttgttgcct ... ccctttgcagTCCCTAGCATATTTCCCATTTGCAATTGCAAATGCGCTGACTGCACGGCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatgatgatacgcatatattttgttatgattaaacattgtgcctccctttgcagTCCCTAGCATATTTCCCATTTGCAATTGCAAATGCGCTGACTGCACGGCTTGATGATGG
                                     ttgtgcctcccttt  CT-rich tract
              atatattttgttatga  TA-rich tract