1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtaggcatccaacaacattcttttatcgaatcgtcttccttgcagggttgtgcataaatgcttgttactgagctttgttgttgttctatttcagGTAAGGGAACGTTGTCGGAAAGAATGGGGAATTTTCCAGACGAGAATTGCGGAGGCAGAGAAGTCATATTACGAGATGATGGGCGTCCCCCCACCAAACG
species | Oryza sativa |
transcript | LOC_Os01g73970.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: GGGCAGTCAGAGCACGGGAGGGCACCGTGGGAAGGG GTAAGGGAACGTTGTCGGAAAGAATGGGGAATTTTCCAGACGAGAATTGCGEST: gi|86424012|gb|CI062773.1|CI062773
genomic: GGGCAGTCAGAGCACGGGAGGGCACCGTGGGAAGGGgtaggcatcc ... tctatttcagGTAAGGGAACGTTGTCGGAAAGAATGGGGAATTTTCCAGACGAGAATTGCG
EST: GGGCAGTCAGAGCACGGGAGGGCACCGTGGGAAGGG GTAAGGGAACGTTGTCGGAAAGAATGGGGAATTTTCCAGACGAGAATTGCGEST: gi|88470908|gb|CI408179.1|CI408179
genomic: GGGCAGTCAGAGCACGGGAGGGCACCGTGGGAAGGGgtaggcatcc ... tctatttcagGTAAGGGAACGTTGTCGGAAAGAATGGGGAATTTTCCAGACGAGAATTGCG
EST: GGGCAGTCAGAGCACGGGAGGGCACCGTGGGAAGGG GTAAGGGAACGTTGTCGGAAAGAATGGGGAATTTTCCAGACGAGAATTGCGEST: gi|58595145|gb|CF993453.1|CF993453
genomic: GGGCAGTCAGAGCACGGGAGGGCACCGTGGGAAGGGgtaggcatcc ... tctatttcagGTAAGGGAACGTTGTCGGAAAGAATGGGGAATTTTCCAGACGAGAATTGCG
EST: GGGCAGTCAGAGCACGGGAGGGCACCGTGGGAAGGG GTAAGGGAACGTTGTCGGAAAGAATGGGGAATTTTCCAGACGAGAATTGCGEST: gi|86536269|gb|CI176475.1|CI176475
genomic: GGGCAGTCAGAGCACGGGAGGGCACCGTGGGAAGGGgtaggcatcc ... tctatttcagGTAAGGGAACGTTGTCGGAAAGAATGGGGAATTTTCCAGACGAGAATTGCG
EST: GGGCAGTCAGAGCACGGGAGGGCACCGTGGGAAGGG GTAAGGGAACGTTGTCGGAAAGAATGGGGAATTTTCCAGACGAGAATTGCGEST: gi|88479440|gb|CI416711.1|CI416711
genomic: GGGCAGTCAGAGCACGGGAGGGCACCGTGGGAAGGGgtaggcatcc ... tctatttcagGTAAGGGAACGTTGTCGGAAAGAATGGGGAATTTTCCAGACGAGAATTGCG
EST: GGGCAGTCAGAGCACGGGAGGGCACCGTGGGAAGGG GTAAGGGAACGTTGTCGGAAAGAATGGGGAATTTTCCAGACGAGAATTGCGEST: gi|12404721|gb|AU166322.1|AU166322
genomic: GGGCAGTCAGAGCACGGGAGGGCACCGTGGGAAGGGgtaggcatcc ... tctatttcagGTAAGGGAACGTTGTCGGAAAGAATGGGGAATTTTCCAGACGAGAATTGCG
EST: GGGCAGTCAGAGCACGGGAGGGCACCGTGGGAAGGG GTAAGGGAACGTTGTCGGAAAGAATGGGGAATTTTCCAGACGAGAATTGCGEST: gi|86893421|gb|CI313341.1|CI313341
genomic: GGGCAGTCAGAGCACGGGAGGGCACCGTGGGAAGGGgtaggcatcc ... tctatttcagGTAAGGGAACGTTGTCGGAAAGAATGGGGAATTTTCCAGACGAGAATTGCG
EST: GGGCAGTCAGAGCACGGGAGGGCACCGTGGGAAGGG GTAAGGGAACGTTGTCGGAAAGAATGGGGAATTTTCCAGACGAGAATTGCGEST: gi|88522872|gb|CI450665.1|CI450665
genomic: GGGCAGTCAGAGCACGGGAGGGCACCGTGGGAAGGGgtaggcatcc ... tctatttcagGTAAGGGAACGTTGTCGGAAAGAATGGGGAATTTTCCAGACGAGAATTGCG
EST: GGGCAGTCAGAGCACGGGAGGGCACCGTGGGAAGGG GTAAGGGAACGTTGTCGGAAAGAATGGGGAATTTTCCAGACGAGAATTGCGEST: gi|1854327|gb|AA231661.1|AA231661
genomic: GGGCAGTCAGAGCACGGGAGGGCACCGTGGGAAGGGgtaggcatcc ... tctatttcagGTAAGGGAACGTTGTCGGAAAGAATGGGGAATTTTCCAGACGAGAATTGCG
EST: GGCACCGTGGGAAGGG GTAAGGGAACGTTGTCGGAAAGAATGGGGAATTTTCCAGACGAGAATTGCGEST: gi|1854181|gb|AA231809.1|AA231809
genomic: GGCACCGTGGGAAGGGgtaggcatcc ... tctatttcagGTAAGGGAACGTTGTCGGAAAGAATGGGGAATTTTCCAGACGAGAATTGCG
EST: GGGCAGTCAGAGCACGGGAGGGCACCGTGGGAAGGG GTAAGGGAACGTTGTCGGAAAGAATGGGGAATTTTCCAGACGAGAATTGCGEST: gi|29663566|gb|CB659841.1|CB659841
genomic: GGGCAGTCAGAGCACGGGAGGGCACCGTGGGAAGGGgtaggcatcc ... tctatttcagGTAAGGGAACGTTGTCGGAAAGAATGGGGAATTTTCCAGACGAGAATTGCG
EST: GGGCAGTCAGAGCACGGGAGGGCACCGTGGGAAGGG GTAAGGGAACGTTGTCGGAAAGAATGGGGAATTTTCCAGACGAGAATTGCGEST: gi|88279267|gb|CI400267.1|CI400267
genomic: GGGCAGTCAGAGCACGGGAGGGCACCGTGGGAAGGGgtaggcatcc ... tctatttcagGTAAGGGAACGTTGTCGGAAAGAATGGGGAATTTTCCAGACGAGAATTGCG
EST: GGGCANTCAGAGCACGGGAGGGCACCGTGGGAAGGG GTAAGGGAACGTTGTCGGAAAGAATGGGGAATTTTCCAGACGAGAATTGCGEST: gi|88523350|gb|CI451164.1|CI451164
genomic: GGGCAGTCAGAGCACGGGAGGGCACCGTGGGAAGGGgtaggcatcc ... tctatttcagGTAAGGGAACGTTGTCGGAAAGAATGGGGAATTTTCCAGACGAGAATTGCG
EST: GGGCAGTCAGAGCACGGGAGGGCACCGTGGGAAGGG GTAAGGGAACGTTGTCGGAAAGAATGGGGAATTTTCCAGACGAGAATTGCGEST: gi|88489023|gb|CI426294.1|CI426294
genomic: GGGCAGTCAGAGCACGGGAGGGCACCGTGGGAAGGGgtaggcatcc ... tctatttcagGTAAGGGAACGTTGTCGGAAAGAATGGGGAATTTTCCAGACGAGAATTGCG
EST: GGGCAGTCAGAGCACGGGAGGGCACCGTGGGAAGGG GTAAGGGAACGTTGTCGGAAAGAATGGGGAATTTTCCAGACGAGAATTGCGEST: gi|88902346|gb|CI374954.1|CI374954
genomic: GGGCAGTCAGAGCACGGGAGGGCACCGTGGGAAGGGgtaggcatcc ... tctatttcagGTAAGGGAACGTTGTCGGAAAGAATGGGGAATTTTCCAGACGAGAATTGCG
EST: GGGCAGTCAGAGCACGGGAGGGCACCGTGGGAAGGG GTAAGGGAACGTTGTCGGAAAGAATGGGGAATTTTCCAGACGAGAATTGCGEST: gi|3760914|gb|C98168.1|C98168
genomic: GGGCAGTCAGAGCACGGGAGGGCACCGTGGGAAGGGgtaggcatcc ... tctatttcagGTAAGGGAACGTTGTCGGAAAGAATGGGGAATTTTCCAGACGAGAATTGCG
EST: GGGCAGTCAGAGCACGGGAGGGCACCGTGGGAAGGG GTAAGGGAACGTTGTCGGAAAGAATGGGGAATTTTCCAGACGAGAATTGCGEST: gi|29641985|gb|CB646992.1|CB646992
genomic: GGGCAGTCAGAGCACGGGAGGGCACCGTGGGAAGGGgtaggcatcc ... tctatttcagGTAAGGGAACGTTGTCGGAAAGAATGGGGAATTTTCCAGACGAGAATTGCG
EST: GGGCAGTCAGAGCACGGGAGGGCACCGTGGGAAGGG GTAAGGGAACGTTGTCGGAAAGAATGGGGAATTTTCCAGACGAGAATTGCGEST: gi|86526488|gb|CI166694.1|CI166694
genomic: GGGCAGTCAGAGCACGGGAGGGCACCGTGGGAAGGGgtaggcatcc ... tctatttcagGTAAGGGAACGTTGTCGGAAAGAATGGGGAATTTTCCAGACGAGAATTGCG
EST: GGGCAGTCAGAGCACGGGAGGGCACCGTGGGAAGGG GTAAGGGAACGTTGTCGGAAAGAATGGGGAATTTTCCAGACGAGAATTGCGEST: gi|5803529|gb|AI978499.1|AI978499
genomic: GGGCAGTCAGAGCACGGGAGGGCACCGTGGGAAGGGgtaggcatcc ... tctatttcagGTAAGGGAACGTTGTCGGAAAGAATGGGGAATTTTCCAGACGAGAATTGCG
EST: GGGCAGTCAGAGCACGGGAGGGCACCGTGGGAAGGG GTAAGGGAACGTTGTCGGAAAGAATGGGGAATTTTCCAGACGAGAATTGCGEST: gi|86888761|gb|CI307819.1|CI307819
genomic: GGGCAGTCAGAGCACGGGAGGGCACCGTGGGAAGGGgtaggcatcc ... tctatttcagGTAAGGGAACGTTGTCGGAAAGAATGGGGAATTTTCCAGACGAGAATTGCG
EST: CGGCAGTCAGAGCACGGGAGGGCACCGTGGGAAGGG GTAAGGGAACGTTGTCGGAAAGAATGGGGAATTTTCCAGACGAGAATTGCGEST: gi|88663212|gb|CI479204.1|CI479204
genomic: GGGCAGTCAGAGCACGGGAGGGCACCGTGGGAAGGGgtaggcatcc ... tctatttcagGTAAGGGAACGTTGTCGGAAAGAATGGGGAATTTTCCAGACGAGAATTGCG
EST: GGGCAGTCAGAGCACGGGAGGGCACCGTGGGAAGGG GTAAGGGAACGTTGTCGGAAAGAATGGGGAATTTTCCAGACGAGAATTGCG
genomic: GGGCAGTCAGAGCACGGGAGGGCACCGTGGGAAGGGgtaggcatcc ... tctatttcagGTAAGGGAACGTTGTCGGAAAGAATGGGGAATTTTCCAGACGAGAATTGCG
ttgcagggttgtgcataaatgcttgttactgagctttgttgttgttctatttcagGTAAGGGAACGTTGTCGGAAAGAATGGGGAATTTTCCAGACGAGAATTGCGGAGGCAGAGAAGTCATATTACGAGATGATGGGCGTCCCCCCACCAAACG
ttctatttc CT-rich tract
ttctattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggcatccaacaacattcttttatcgaatcgtcttccttgcagggttgtgcataaatgcttgttactgagctttgttgttgttctatttcagGTAAGGGAACGTTGTCGGAAAGAATGGGGAATTTTCCAGACGAGAATTGCGGAGGCAGAGAAGTCATATTACGAGATGATGGGCGTCCCCCCACCAAACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG