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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aatgtatgttctactttcctagtcaggatatttaactattgtgcattggtaactgattttgtgtattcaaattcacggcttgataaatatttctatgcagAAACCTTACTTCAAAGATTGCCCTTGGCTGGCGAATTCGCATGACCAACCATCTACTTCAATATTATTTGAAACGAAATGCTTTTTACAAG

Basic information

species Oryza sativa
transcript LOC_Os01g73530.2
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g73530.1 (Oryza sativa), 3'ss of exon 14
lower sequence: GRMZM2G375807_T01 (Zea mays), 3'ss of exon 13
------------------------------------------------------------------------------aatgtatgttctactttcctagtcaggatatttaactattgtgcattggtaactgattttgtgtattcaaattcacggcttgataaat-atttctatgcagAAACCTTACTTCAAAGATTGCCCTTGGCTGGCGAATTCGCATGACCAACCATCTACTTCAATATTATTTGAAACGAAATGCTTTTTACAAG
||| || | | || | ||| | || || | ||||| |||| | || ||| | || | |||| ||| ||||| | ||| ||||||||||||| || |||||||| ||||| |||||||||||||| ||| | |||||||||||||||||| |||||||||||||||||
gtaatttgtggttccactcatttgaagtattttctagatgctaaatttggttcctgatagaatctttactgcatgaatgatgaatccaatttcattcttcctggcatacagagctgtt-tatgaaattaactaattt-atataatcagttccatgatctgattaattgtttctttacagGAACCTTACTTCAAGAATCGCCCTTGGATGGCGGATTCGCATGACCAATCATTTGCTTCAATATTATTTGAAAAGAAATGCTTTTTACAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|113931002|gb|DQ884097.1|DQ884097
EST:     ATTAGTGTGCTGCAAAGTGCTGCAAATTCAATTGTGTCACCATCACTAAG                         AAACCTTACTTCAAAGATTGCCCTTGGCTG
genomic: ATTAGTGTGCTGCAAAGTGCTGCAAATTCAATTGTGTCACCATCACTAAGgtaatattgg ... ttctatgcagAAACCTTACTTCAAAGATTGCCCTTGGCTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggtaactgattttgtgtattcaaattcacggcttgataaatatttctatgcagAAACCTTACTTCAAAGATTGCCCTTGGCTGGCGAATTCGCATGACCAACCATCTACTTCAATATTATTTGAAACGAAATGCTTTTTACAAG
                                          tatttct  CT-rich tract
 ttgataaatatttcta  TA-rich tract