Sequence
atgc intronic sequence ATGC exonic sequence...aatgtatgttctactttcctagtcaggatatttaactattgtgcattggtaactgattttgtgtattcaaattcacggcttgataaatatttctatgcagAAACCTTACTTCAAAGATTGCCCTTGGCTGGCGAATTCGCATGACCAACCATCTACTTCAATATTATTTGAAACGAAATGCTTTTTACAAG
Basic information
species | Oryza sativa |
transcript | LOC_Os01g73530.2 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os01g73530.1 (Oryza sativa), 3'ss of exon 14
lower sequence: GRMZM2G375807_T01 (Zea mays), 3'ss of exon 13
------------------------------------------------------------------------------aatgtatgttctactttcctagtcaggatatttaactattgtgcattggtaactgattttgtgtattcaaattcacggcttgataaat-atttctatgcagAAACCTTACTTCAAAGATTGCCCTTGGCTGGCGAATTCGCATGACCAACCATCTACTTCAATATTATTTGAAACGAAATGCTTTTTACAAG
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gtaatttgtggttccactcatttgaagtattttctagatgctaaatttggttcctgatagaatctttactgcatgaatgatgaatccaatttcattcttcctggcatacagagctgtt-tatgaaattaactaattt-atataatcagttccatgatctgattaattgtttctttacagGAACCTTACTTCAAGAATCGCCCTTGGATGGCGGATTCGCATGACCAATCATTTGCTTCAATATTATTTGAAAAGAAATGCTTTTTACAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|113931002|gb|DQ884097.1|DQ884097EST: ATTAGTGTGCTGCAAAGTGCTGCAAATTCAATTGTGTCACCATCACTAAG AAACCTTACTTCAAAGATTGCCCTTGGCTG
genomic: ATTAGTGTGCTGCAAAGTGCTGCAAATTCAATTGTGTCACCATCACTAAGgtaatattgg ... ttctatgcagAAACCTTACTTCAAAGATTGCCCTTGGCTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttggtaactgattttgtgtattcaaattcacggcttgataaatatttctatgcagAAACCTTACTTCAAAGATTGCCCTTGGCTGGCGAATTCGCATGACCAACCATCTACTTCAATATTATTTGAAACGAAATGCTTTTTACAAG
tatttct CT-rich tract
ttgataaatatttcta TA-rich tract