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gtaactctggttgccatttattgagctgttttcttgcatacgtagttgatctaaatgatttattattatcatgcagATTGAAAACGTACATTTTTTTGAGACAACAGAAGCTTTGGACTTCAGTTGGCTACTTCAAGGAGATGGCTGTGCTTTGGGCTCTGGTTCACTTAATGTCC
species | Oryza sativa |
transcript | LOC_Os01g72340.2 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: ACTATTTATACCAGCCTATCAAAATAACAATGATGGATAACATGCTTAAG ATTGAAAACGTACATTTEST: gi|14571259|gb|BI118627.1|BI118627
genomic: AATATTTATACCAGCCTATCAAAATAACAATGATGGATAACATGCTTAAGgtaactctgg ... tatcatgcagATTGAAAACGTACATTT
EST: AATATTTATACCAGCCTATCAAAATAACAATGATGGATAACATGCTTAAG ATTGAAAACGTACAATTTTTTGCA-ACAACAGAAGCTTTGGAGTTCAGTTGEST: gi|58681122|gb|CK069809.1|CK069809
genomic: AATATTTATACCAGCCTATCAAAATAACAATGATGGATAACATGCTTAAGgtaactctgg ... tatcatgcagATTGAAAACGTACATTTTTTTG-AGACAACAGAAGCTTTGGACTTCAGTTG
EST: AATATTTATACCAGCCTATCAAAATAACAATGATGGATAACATGCTTAAG ATTGAAAACGTACANNNNNNNGAGACAACAGAAGCTTTGGACTTCAGTTGGEST: gi|58687216|gb|CK075903.1|CK075903
genomic: AATATTTATACCAGCCTATCAAAATAACAATGATGGATAACATGCTTAAGgtaactctgg ... tatcatgcagATTGAAAACGTACATTTTTTTGAGACAACAGAAGCTTTGGACTTCAGTTGG
EST: AATATTTATACCAGCCTATCAAAATAACAATGATGGATAACATGCTTAAG ATTGAAAACGTACANNNNNNNGAGACAACAGAAGCTTTGGACTTCAGTTGGEST: gi|58663708|gb|CK052394.1|CK052394
genomic: AATATTTATACCAGCCTATCAAAATAACAATGATGGATAACATGCTTAAGgtaactctgg ... tatcatgcagATTGAAAACGTACATTTTTTTGAGACAACAGAAGCTTTGGACTTCAGTTGG
EST: AATATTTATACCAGCCTATCAAAATAACAATGATGGATAACATGCTTAAG ATTGAAAACGTACAEST: gi|86905446|gb|CI285409.1|CI285409
genomic: AATATTTATACCAGCCTATCAAAATAACAATGATGGATAACATGCTTAAGgtaactctgg ... tatcatgcagATTGAAAACGTACA
EST: AATATTTATACCAGCCTATCAAAATAACAATGATGGATAACATGCTTAAG ATTGAAAACGTACANNNNNNNGAGACAACAGAAGCTTTGGACTTCAGTTGGEST: gi|38568808|gb|CD671023.1|CD671023
genomic: AATATTTATACCAGCCTATCAAAATAACAATGATGGATAACATGCTTAAGgtaactctgg ... tatcatgcagATTGAAAACGTACATTTTTTTGAGACAACAGAAGCTTTGGACTTCAGTTGG
EST: AATATTTATACCAGCCTATCAAAATAACAATGATGGATAACATGCTTAAG ATTGAAAACGTACANNNNNNNGAGACAACAGAAGCTTTGGACTTCAGTTGGEST: gi|29657376|gb|CB653651.1|CB653651
genomic: AATATTTATACCAGCCTATCAAAATAACAATGATGGATAACATGCTTAAGgtaactctgg ... tatcatgcagATTGAAAACGTACATTTTTTTGAGACAACAGAAGCTTTGGACTTCAGTTGG
EST: AATATTTATACCAGCCTATCAAAATAACAATGATGGATAACATGCTTAAG ATTGAAAACGTACANNNNNNNGAGACAACAGAAGCTTTGGACTTCAGTTGGEST: gi|29677247|gb|CB673522.1|CB673522
genomic: AATATTTATACCAGCCTATCAAAATAACAATGATGGATAACATGCTTAAGgtaactctgg ... tatcatgcagATTGAAAACGTACATTTTTTTGAGACAACAGAAGCTTTGGACTTCAGTTGG
EST: AATATTTATACCAGCCTATCAAAATAACAATGATGGATAACATGCTTAAG ATTGAAAACGTACANNNNNNNGAGACAACAGAAGCTTTGGACTTCAGTTGGEST: gi|58670588|gb|CK059274.1|CK059274
genomic: AATATTTATACCAGCCTATCAAAATAACAATGATGGATAACATGCTTAAGgtaactctgg ... tatcatgcagATTGAAAACGTACATTTTTTTGAGACAACAGAAGCTTTGGACTTCAGTTGG
EST: AATATTTATACCAGCCTATCAAAATAACAATGATGGATAACATGCTTAAG ATTGAAAACGTACANNNNNNNGAGACAACAGAAGCTTTGGACTTCAGTTGG
genomic: AATATTTATACCAGCCTATCAAAATAACAATGATGGATAACATGCTTAAGgtaactctgg ... tatcatgcagATTGAAAACGTACATTTTTTTGAGACAACAGAAGCTTTGGACTTCAGTTGG
tgagctgttttcttgcatacgtagttgatctaaatgatttattattatcatgcagATTGAAAACGTACATTTTTTTGAGACAACAGAAGCTTTGGACTTCAGTTGGCTACTTCAAGGAGATGGCTGTGCTTTGGGCTCTGGTTCACTTAATGTCC
atctaaa putative branch site (score: 3)
tagttgatctaaatga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaactctggttgccatttattgagctgttttcttgcatacgtagttgatctaaatgatttattattatcatgcagATTGAAAACGTACATTTTTTTGAGACAACAGAAGCTTTGGACTTCAGTTGGCTACTTCAAGGAGATGGCTGTGCTTTGGGCTCTGGTTCACTTAATGTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG