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gtgccatgctcattcttcactttattttgttaaacttttctttactttaagcacatctgatctctagaccaatttcaacgatctttgctctttggcaagcagGGGTCAAAATGTGCCGGTGCAATAGGGACATGCACTATTCTTTGCATGAAAACAGAAGCTGAACCGCCCCATTGAAGACCAATCTATTCCATGGATAAGA
species | Oryza sativa |
transcript | LOC_Os01g69060.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: TCATGTGGGGACGGACTCTAGAACATGCCAAGAACAGATCCTCCACATAG GGGTCAAAATGTGCCGGTGCAATAGGGACATGCACTATTCTTTGCATGAAAEST: gi|88478889|gb|CI416160.1|CI416160
genomic: TCATGTGGGGACGGACTCTAGAACATGCCAAGAACAGATCCTCCACATAGgtgccatgct ... tggcaagcagGGGTCAAAATGTGCCGGTGCAATAGGGACATGCACTATTCTTTGCATGAAA
EST: TCATNTGGGGACNGACTTTAGAACATGCCAAGAACAGATCCTCCACATAG GGGTCAAAATGTGCCGGTNCAATAGGGACATGCACTATTCTTTGCATGGAAEST: gi|58689285|gb|CK077972.1|CK077972
genomic: TCATGTGGGGACGGACTCTAGAACATGCCAAGAACAGATCCTCCACATAGgtgccatgct ... tggcaagcagGGGTCAAAATGTGCCGGTGCAATAGGGACATGCACTATTCTTTGCATGAAA
EST: CATGTTGGGGACGGACTCTAGAACATGCCAAGAACAGATCCTCCACATAG GGGTCAAAATGTGCCGGTGCCATAGGGACATGCACTATTCTTTGCATGAAAEST: gi|29639813|gb|CB644822.1|CB644822
genomic: CATG-TGGGGACGGACTCTAGAACATGCCAAGAACAGATCCTCCACATAGgtgccatgct ... tggcaagcagGGGTCAAAATGTGCCGGTGCAATAGGGACATGCACTATTCTTTGCATGAAA
EST: TCATGTGGGGACGGACTCTAGAACATGCCAAGAACAGATCCTCCACATAG GGGTCAAAATGTGCCGGTGCAATAGGGACATGCACTATTCTTTGCATGAAAEST: gi|88848470|gb|CI086992.1|CI086992
genomic: TCATGTGGGGACGGACTCTAGAACATGCCAAGAACAGATCCTCCACATAGgtgccatgct ... tggcaagcagGGGTCAAAATGTGCCGGTGCAATAGGGACATGCACTATTCTTTGCATGAAA
EST: TCATGTGGGGACGGACTCTAGAACATGCCAAGAACAGATCCTCCACATAG GGGTCAAAATGTGCCGGTGCAATAGGGACATGCACTATTCTTTGCATGAAAEST: gi|86849508|gb|CI299701.1|CI299701
genomic: TCATGTGGGGACGGACTCTAGAACATGCCAAGAACAGATCCTCCACATAGgtgccatgct ... tggcaagcagGGGTCAAAATGTGCCGGTGCAATAGGGACATGCACTATTCTTTGCATGAAA
EST: TCATGTGGGGACGGACTCTAGAACATGCCAAGAACAGATCCTCCACATAG GGGTCAAAATGTGCCGGTGCAATAGGGACATGCACTATTCTTTGCATGAAAEST: gi|86523000|gb|CI163206.1|CI163206
genomic: TCATGTGGGGACGGACTCTAGAACATGCCAAGAACAGATCCTCCACATAGgtgccatgct ... tggcaagcagGGGTCAAAATGTGCCGGTGCAATAGGGACATGCACTATTCTTTGCATGAAA
EST: TCATGTGGGGACGGACTCTAGAACATGCCAAGAACAGATCCTCCACATAG GGGTCAAAATGTGCCGGTGCAATAGGGACATGCACTATTCTTTGCATGAAA
genomic: TCATGTGGGGACGGACTCTAGAACATGCCAAGAACAGATCCTCCACATAGgtgccatgct ... tggcaagcagGGGTCAAAATGTGCCGGTGCAATAGGGACATGCACTATTCTTTGCATGAAA
taagcacatctgatctctagaccaatttcaacgatctttgctctttggcaagcagGGGTCAAAATGTGCCGGTGCAATAGGGACATGCACTATTCTTTGCATGAAAACAGAAGCTGAACCGCCCCATTGAAGACCAATCTATTCCATGGATAAGA
atctgat putative branch site (score: 19)
tctttgctcttt putative PPT
aatttcaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgccatgctcattcttcactttattttgttaaacttttctttactttaagcacatctgatctctagaccaatttcaacgatctttgctctttggcaagcagGGGTCAAAATGTGCCGGTGCAATAGGGACATGCACTATTCTTTGCATGAAAACAGAAGCTGAACCGCCCCATTGAAGACCAATCTATTCCATGGATAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA