1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
atatcctactgcttatttttttagcagttaatcactgcactttcacatttattaatattaaactttttattccttaaccataattaacATTTGTGCTCTTCAGAAATTTGCTAGCAATCTGAGATCCAAGAAGGTTTTATTCGAGGATATTAGTGCCATTGATGCT
species | Oryza sativa |
transcript | LOC_Os01g55094.1 |
intron # | 14 |
splice site | 3' |
intron type | U12 (go to U12 genes for details) |
EST: TTAACAACAATACAATGCTGATGTTAAACCATCCAATGTTTGAGGATAAA ATTTGTGCTCTTCAGAAATTTGCTAGCAATCTGAGATCCAAGAAGGTTTTAEST: gi|86890043|gb|CI320032.1|CI320032
genomic: TTAACAACAATACAATGCTGATGTTAAACCATCCAATGTTTGAGGATAAAatatcctact ... cataattaacATTTGTGCTCTTCAGAAATTTGCTAGCAATCTGAGATCCAAGAAGGTTTTA
EST: TTGAGGATAAA ATTTGTGCTCTTCAGAAATTTGCTAGCAATCTGAAATCCAAGAAGGTTTTA
genomic: TTGAGGATAAAatatcctact ... cataattaacATTTGTGCTCTTCAGAAATTTGCTAGCAATCTGAGATCCAAGAAGGTTTTA
actgcactttcacatttattaatattaaactttttattccttaaccataattaacATTTGTGCTCTTCAGAAATTTGCTAGCAATCTGAGATCCAAGAAGGTTTTATTCGAGGATATTAGTGCCATTGATGCT
ttccttaac putative branch site
atttattaatattaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atatcctactgcttatttttttagcagttaatcactgcactttcacatttattaatattaaactttttattccttaaccataattaacATTTGTGCTCTTCAGAAATTTGCTAGCAATCTGAGATCCAAGAAGGTTTTATTCGAGGATATTAGTGCCATTGATGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT