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...taaaagtcaacaacatcatatagtattaggaaaaaaaatgtaaagaatatctcataacactgagctagccaattcatatgtgttcatccattatatgcagAAAAAGAGGTTCTGCTTCTAAGTACCAGAGTGGCTTGCTTGCTTTTCTCCTCGAAGGTTTCGTGTTCTTCTGTCAACTGAATACTTGTAAGTTGGACTCT
species | Oryza sativa |
transcript | LOC_Os01g50616.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: TGGACGAACTGCTTGCATACGCCGACCAGCAAAAGAATATTCAATTTCGG AAAAAGAGGTTCTGCTTCTAAGTACCAGAGTGGCTTGCTTGCTTTTCTCCTEST: gi|29646804|gb|CB651811.1|CB651811
genomic: TGGACGAACTGCTTGCATACGCCGACCAGCAAAAGAATATTCAATTTCGGgtaagttgtg ... ttatatgcagAAAAAGAGGTTCTGCTTCTAAGTACCAGAGTGGCTTGCTTGCTTTTCTCCT
EST: TGGACGAACTGCTTGCATACGCCGACCAGCAAAAGAATATTCAATTTCGG AAAAAGAGGTTCTGCTTCTAAGTACCAGAGTGGCTTGCTTGCTTTTCTCCTEST: gi|29625601|gb|CB630612.1|CB630612
genomic: TGGACGAACTGCTTGCATACGCCGACCAGCAAAAGAATATTCAATTTCGGgtaagttgtg ... ttatatgcagAAAAAGAGGTTCTGCTTCTAAGTACCAGAGTGGCTTGCTTGCTTTTCTCCT
EST: TGGACGAACTGCTTGCATACGCCGACCAGCAAAAGAATATTCAATTTCGG AAAAAGAGGTTCTGCTTCTAAGTACCAGAGTGGCTTGCTTGCTTTTCTCCTEST: gi|29663640|gb|CB659915.1|CB659915
genomic: TGGACGAACTGCTTGCATACGCCGACCAGCAAAAGAATATTCAATTTCGGgtaagttgtg ... ttatatgcagAAAAAGAGGTTCTGCTTCTAAGTACCAGAGTGGCTTGCTTGCTTTTCTCCT
EST: TGGACGAACTGCTTGCATACGCCGACCAGCAAAAGAATATTCAATTTCGG AAAAAGAGGTTCTGCTTCTAAGTACCAGAGTGGCTTGCTTGCTTTTCTCCT
genomic: TGGACGAACTGCTTGCATACGCCGACCAGCAAAAGAATATTCAATTTCGGgtaagttgtg ... ttatatgcagAAAAAGAGGTTCTGCTTCTAAGTACCAGAGTGGCTTGCTTGCTTTTCTCCT
aatatctcataacactgagctagccaattcatatgtgttcatccattatatgcagAAAAAGAGGTTCTGCTTCTAAGTACCAGAGTGGCTTGCTTGCTTTTCTCCTCGAAGGTTTCGTGTTCTTCTGTCAACTGAATACTTGTAAGTTGGACTCT
tcataac putative branch site (score: 2)
aattcatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taaaagtcaacaacatcatatagtattaggaaaaaaaatgtaaagaatatctcataacactgagctagccaattcatatgtgttcatccattatatgcagAAAAAGAGGTTCTGCTTCTAAGTACCAGAGTGGCTTGCTTGCTTTTCTCCTCGAAGGTTTCGTGTTCTTCTGTCAACTGAATACTTGTAAGTTGGACTCT
- - - -caacaac
- - - - - - - - - - - - - - - aaaaaaa
- - - - - - - - - - - - - - - - - - - - -aaagaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catatgt