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gtaatattttgattattgcttgcttttttttcctgaaaggaaattaatctcttctatatatcacgtttgtccgcttgctcctattaactccttaactttctacgtacttttgcagCTCAAAGGTTTTGAATTCATAAAGGCTGTACATCTTGAACCAGTGCCATTTGACATGGACCGTGATTTGATTACTCCAACATATAAAAAGAAGCGCCCTC
species | Oryza sativa |
transcript | LOC_Os01g46750.4 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: CAAAAGAATACATTTTGGGAGAACTGTCAAAAGTAGGAAAAGAGAAGAAG CTCAAAGGTTTTGAATTCATAAAGGCTGTACATCTTGAACCAGTGCCATTTEST: gi|88376684|gb|CI537988.1|CI537988
genomic: CAAAAGAATACATTTTGGGAGAACTGTCAAAAGTAGGAAAAGAGAAGAAGgtaatatttt ... acttttgcagCTCAAAGGTTTTGAATTCATAAAGGCTGTACATCTTGAACCAGTGCCATTT
EST: AAGAATACATTTTGGGAGAACTGTCAAAAGTAGGAAAAGAGAAGAAG CTCAAAGGTTTTGAATTCATAAAGGCTGTACATCTTGAACCAGTGCCATTTEST: gi|88473320|gb|CI410591.1|CI410591
genomic: AAGAATACATTTTGGGAGAACTGTCAAAAGTAGGAAAAGAGAAGAAGgtaatatttt ... acttttgcagCTCAAAGGTTTTGAATTCATAAAGGCTGTACATCTTGAACCAGTGCCATTT
EST: AAAAGTAGGAAAAGAGAAGAAG CTCAAAGGTTTTGAATTCATAAAGGCTGTACATCTTGAACCAGTGCCATTTEST: gi|87031853|gb|CI272554.1|CI272554
genomic: AAAAGTAGGAAAAGAGAAGAAGgtaatatttt ... acttttgcagCTCAAAGGTTTTGAATTCATAAAGGCTGTACATCTTGAACCAGTGCCATTT
EST: CAAAAGAATACATTTTGGGAGAACTGTCAAAAGTAGGAAAAGAGAAGAAG CTCAAAGGTTTTGAATTCATAAAGGCTGTACATCTTGAACCAGTGCCATTTEST: gi|88297470|gb|CI547948.1|CI547948
genomic: CAAAAGAATACATTTTGGGAGAACTGTCAAAAGTAGGAAAAGAGAAGAAGgtaatatttt ... acttttgcagCTCAAAGGTTTTGAATTCATAAAGGCTGTACATCTTGAACCAGTGCCATTT
EST: GGAAAAGAGAAGAAG CTCAAAGGTTTTGAATTCATAAAGGCTGTACATCTTGAACCAGTGCCATTTEST: gi|87020943|gb|CI269660.1|CI269660
genomic: GGAAAAGAGAAGAAGgtaatatttt ... acttttgcagCTCAAAGGTTTTGAATTCATAAAGGCTGTACATCTTGAACCAGTGCCATTT
EST: CAAAAGAATACATTTTGGGAGAACTGTCAAAAGTAGGAAAAGAGAAGAAG CTCAAAGGTTTTGAATTCATAAAGGCTGTACATCTTGAACCAGTGCCATTTEST: gi|88383770|gb|CI545921.1|CI545921
genomic: CAAAAGAATACATTTTGGGAGAACTGTCAAAAGTAGGAAAAGAGAAGAAGgtaatatttt ... acttttgcagCTCAAAGGTTTTGAATTCATAAAGGCTGTACATCTTGAACCAGTGCCATTT
EST: AAAGTAGGAAAAGAGAAGAAG CTCAAAGGTTTTGAATTCATAAAGGCTGTACATCTTGAACCAGTGCCATTTEST: gi|86862327|gb|CI330209.1|CI330209
genomic: AAAGTAGGAAAAGAGAAGAAGgtaatatttt ... acttttgcagCTCAAAGGTTTTGAATTCATAAAGGCTGTACATCTTGAACCAGTGCCATTT
EST: CAAAAGAATACATTTTGGGAGAACTGTCAAAAGTAGGAAAAGAGAAGAAG CTCAAAGGTTTTGAATTCATAAAGGCTGTACATCTTGAACCAGTCCCATTTEST: gi|86425938|gb|CI071035.1|CI071035
genomic: CAAAAGAATACATTTTGGGAGAACTGTCAAAAGTAGGAAAAGAGAAGAAGgtaatatttt ... acttttgcagCTCAAAGGTTTTGAATTCATAAAGGCTGTACATCTTGAACCAGTGCCATTT
EST: CAAAAGAATACATTTTGGGAGAACTGTCAAAAGTAGGAAAAGAGAAGAAG CTCAAAGGTTTTGAATTCATAAAGGCTGTACATCTTGAACCAGTGCCATTTEST: gi|88447311|gb|CI533952.1|CI533952
genomic: CAAAAGAATACATTTTGGGAGAACTGTCAAAAGTAGGAAAAGAGAAGAAGgtaatatttt ... acttttgcagCTCAAAGGTTTTGAATTCATAAAGGCTGTACATCTTGAACCAGTGCCATTT
EST: CTGTCGAAAGTAGGAAAAGAGAAGAAG CTCAAAGGTTTTGAATTCATAAAGGCTGTACATCTTGAACCAGTGCCATTTEST: gi|88838591|gb|CI375139.1|CI375139
genomic: CTGTCAAAAGTAGGAAAAGAGAAGAAGgtaatatttt ... acttttgcagCTCAAAGGTTTTGAATTCATAAAGGCTGTACATCTTGAACCAGTGCCATTT
EST: CAAAAGGATACATTTTGGGAGAACTGTCGAAAGTAGGAAAAGAGAAGAAG CTCAAAGGTTTTGAATTCATAAAGGCTGTACATGTTGAACCAGTGCCATTTEST: gi|88489629|gb|CI426901.1|CI426901
genomic: CAAAAGAATACATTTTGGGAGAACTGTCAAAAGTAGGAAAAGAGAAGAAGgtaatatttt ... acttttgcagCTCAAAGGTTTTGAATTCATAAAGGCTGTACATCTTGAACCAGTGCCATTT
EST: AACTGTCAAAAGTAGGAAAAGAGAAGAAG CTCAAAGGTTTTGAATTCATAAAGGCTGTACATCTTGAACCAGTGCCATTTEST: gi|29618099|gb|CB623111.1|CB623111
genomic: AACTGTCAAAAGTAGGAAAAGAGAAGAAGgtaatatttt ... acttttgcagCTCAAAGGTTTTGAATTCATAAAGGCTGTACATCTTGAACCAGTGCCATTT
EST: CAAAAGAATACATTTTGGGAGAACTGTCAAAAGTAGGAAAAGAGAAGAAG CTCAAAGGTTTTGAATTCATAAAGGCTGTACATCTTGAACCAGTGCCATTTEST: gi|88515706|gb|CI443360.1|CI443360
genomic: CAAAAGAATACATTTTGGGAGAACTGTCAAAAGTAGGAAAAGAGAAGAAGgtaatatttt ... acttttgcagCTCAAAGGTTTTGAATTCATAAAGGCTGTACATCTTGAACCAGTGCCATTT
EST: AAAGAATACATTTTGGGAGAACTGTCAAAAGTAGGAAAAGAGAAGAAG CTCAAAGGTTTTGAATTCATAAAGGCTGTACATCTTGAACCAGTGCCATTTEST: gi|27548326|gb|CA766515.2|CA766515
genomic: AAAGAATACATTTTGGGAGAACTGTCAAAAGTAGGAAAAGAGAAGAAGgtaatatttt ... acttttgcagCTCAAAGGTTTTGAATTCATAAAGGCTGTACATCTTGAACCAGTGCCATTT
EST: CAAAAGAATACATTTTGGGAGAACTGTCAAAAGTAGGAAAAGAGAAGAAG CTCAAAGGTTTTGAATTCATAAAGGCTGTACATCTTGAACCAGTGCCATTT
genomic: CAAAAGAATACATTTTGGGAGAACTGTCAAAAGTAGGAAAAGAGAAGAAGgtaatatttt ... acttttgcagCTCAAAGGTTTTGAATTCATAAAGGCTGTACATCTTGAACCAGTGCCATTT
tcacgtttgtccgcttgctcctattaactccttaactttctacgtacttttgcagCTCAAAGGTTTTGAATTCATAAAGGCTGTACATCTTGAACCAGTGCCATTTGACATGGACCGTGATTTGATTACTCCAACATATAAAAAGAAGCGCCCTC
tactttt CT-rich tract
tattaact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatattttgattattgcttgcttttttttcctgaaaggaaattaatctcttctatatatcacgtttgtccgcttgctcctattaactccttaactttctacgtacttttgcagCTCAAAGGTTTTGAATTCATAAAGGCTGTACATCTTGAACCAGTGCCATTTGACATGGACCGTGATTTGATTACTCCAACATATAAAAAGAAGCGCCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC