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...aaacaaaagtttcctaaattgtaggtcattatcattgatccatgtaacctgaattttttttccaacagaactttgttttgaatcatttggtctcttttagGTCTCACGGAGACTTGTGCTGGATCTTTCGTCTCCCTACCAAATCAGATGTGCATGATAGGGACTGTTGGTCCTCCAGTGCCAAATATTGATGTCTGCCT
species | Oryza sativa |
transcript | LOC_Os01g46750.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: TGAAGAATACCTGAGAGTGGTGACTTGTGCACATGTCTTACAAGGATATG GTCTCACGGAGACTTGTGCTGGATCTTTCGTCTCCCTACCAAATCAGATGTEST: gi|29673146|gb|CB669421.1|CB669421
genomic: TGAAGAATACCTGAGAGTGGTGACTTGTGCACATGTCTTACAAGGATATGgtatatcttt ... tctcttttagGTCTCACGGAGACTTGTGCTGGATCTTTCGTCTCCCTACCAAATCAGATGT
EST: TGAAGAATACCTGAGAGTGGTGACTTGTGCACATGTCTTACAAGGATATG GTCTCACGGAGACTTGTGCTGGATCTTTCGTCTCCCTACCAAATCAGATGTEST: gi|58672830|gb|CK061516.1|CK061516
genomic: TGAAGAATACCTGAGAGTGGTGACTTGTGCACATGTCTTACAAGGATATGgtatatcttt ... tctcttttagGTCTCACGGAGACTTGTGCTGGATCTTTCGTCTCCCTACCAAATCAGATGT
EST: TGAAGAATACCTGAGAGTGGTGACTTGTGCACATGTCTTACCAGGATATG GTCTCACGGAGACTTGTGCTGGATCTTTCGTEST: gi|56157720|gb|C25972.2|C25972
genomic: TGAAGAATACCTGAGAGTGGTGACTTGTGCACATGTCTTACAAGGATATGgtatatcttt ... tctcttttagGTCTCACGGAGACTTGTGCTGGATCTTTCGT
EST: TGAAGAATACCTGAGAGTGGTGACTTGTGCACATGTCTTACAAGGATATG GTCTCACGGAGACTTGTGCTGGATCTTTCGTCTCCCTACCAAATCAGATGT
genomic: TGAAGAATACCTGAGAGTGGTGACTTGTGCACATGTCTTACAAGGATATGgtatatcttt ... tctcttttagGTCTCACGGAGACTTGTGCTGGATCTTTCGTCTCCCTACCAAATCAGATGT
aacctgaattttttttccaacagaactttgttttgaatcatttggtctcttttagGTCTCACGGAGACTTGTGCTGGATCTTTCGTCTCCCTACCAAATCAGATGTGCATGATAGGGACTGTTGGTCCTCCAGTGCCAAATATTGATGTCTGCCT
atgtaac putative branch site (score: 3)
tctctttt putative PPT
aattttttttccaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaacaaaagtttcctaaattgtaggtcattatcattgatccatgtaacctgaattttttttccaacagaactttgttttgaatcatttggtctcttttagGTCTCACGGAGACTTGTGCTGGATCTTTCGTCTCCCTACCAAATCAGATGTGCATGATAGGGACTGTTGGTCCTCCAGTGCCAAATATTGATGTCTGCCT
aaacaaa
- - - - - - - - - - - - - - - - - - -atccatg
- - - - - - - - - - - - - - - - - - - - - - - acctgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacagaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcatttg