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...ttattgtgatatcaattcaaaaaaaaactattgcgatagtgattgcaagatgttccataacctaaaaccatgtagtgactaatcatttgattatgtgcagACAAGTTATTCACTCCGTACTTTCACGGGTCATTCAGCATCTGTTATGTCACTTGACTTCCATCCGAACAAAGAAGATATGATTTGCTCCTGTGATGGTG
species | Oryza sativa |
transcript | LOC_Os01g42260.3 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: TTGCTACATCTTCCTTTGACAAAACCGTGCGGGTTTGGGATGCTGACAAT ACAAGTTATTCACTCCGTACTTTCACGGGTCATTCAGCATCTGTTATGTCAEST: gi|33690021|gb|CF318260.1|CF318260
genomic: TTGCTACATCTTCCTTTGACAAAACCGTGCGGGTTTGGGATGCTGACAATgtatactcct ... ttatgtgcagACAAGTTATTCACTCCGTACTTTCACGGGTCATTCAGCATCTGTTATGTCA
EST: TTGCTACATCTTCCTTTGACAAAACCGTGCGGGTTTGGGATGCTGACAAT ACAAGTTATTCACTCCGTACTTTCACGGGTCATTCAGCATCTGTTATGTCAEST: gi|58608277|gb|CK036310.1|CK036310
genomic: TTGCTACATCTTCCTTTGACAAAACCGTGCGGGTTTGGGATGCTGACAATgtatactcct ... ttatgtgcagACAAGTTATTCACTCCGTACTTTCACGGGTCATTCAGCATCTGTTATGTCA
EST: TTGCTACATCTTCCTTTGACAAAACCGTGCGGGTTTGGGATGCTGACAAT ACAAGTTATTCACTCCGTACTTTCACGGGTCATTCAGCATCTGTTATGTCAEST: gi|66923385|gb|CX110233.1|CX110233
genomic: TTGCTACATCTTCCTTTGACAAAACCGTGCGGGTTTGGGATGCTGACAATgtatactcct ... ttatgtgcagACAAGTTATTCACTCCGTACTTTCACGGGTCATTCAGCATCTGTTATGTCA
EST: TTGCTACATCTTCCTTTGACAAAACCGTGCGGGTTTGGGATGCTGACAAT ACAAGTTATTCACTCCGTACTTTCACGGGTCATTCAGCATCTGTTATGTCAEST: gi|58604540|gb|CK015068.1|CK015068
genomic: TTGCTACATCTTCCTTTGACAAAACCGTGCGGGTTTGGGATGCTGACAATgtatactcct ... ttatgtgcagACAAGTTATTCACTCCGTACTTTCACGGGTCATTCAGCATCTGTTATGTCA
EST: TTGCTACATCTTCCTTTGACAAAACCGTGCGGGTTTGGGATGCTGACAAT ACAAGTTATTCACTCCGTACTTTCACGGGTCATTCAGCATCTGTTATGTCAEST: gi|218488081|gb|FG946110.1|FG946110
genomic: TTGCTACATCTTCCTTTGACAAAACCGTGCGGGTTTGGGATGCTGACAATgtatactcct ... ttatgtgcagACAAGTTATTCACTCCGTACTTTCACGGGTCATTCAGCATCTGTTATGTCA
EST: TTGCTACATCTTCCTTTGACAAAACCGTGCGGGTTTGGGATGCTGACAAT ACAAGTTATTCACTCCGTACTTTCACGGGTCATTCAGCATCTGTTATGTCAEST: gi|3107649|gb|D43389.1|D43389
genomic: TTGCTACATCTTCCTTTGACAAAACCGTGCGGGTTTGGGATGCTGACAATgtatactcct ... ttatgtgcagACAAGTTATTCACTCCGTACTTTCACGGGTCATTCAGCATCTGTTATGTCA
EST: TTGCTACATCTTCCTTTGACAAAACCGTGCGGGTTTGGGATGCTGACAAT ACAAGTTATTCACTCCGTACTTTCACGGGTCATTCAGCATCTNTTATGTCA
genomic: TTGCTACATCTTCCTTTGACAAAACCGTGCGGGTTTGGGATGCTGACAATgtatactcct ... ttatgtgcagACAAGTTATTCACTCCGTACTTTCACGGGTCATTCAGCATCTGTTATGTCA
caagatgttccataacctaaaaccatgtagtgactaatcatttgattatgtgcagACAAGTTATTCACTCCGTACTTTCACGGGTCATTCAGCATCTGTTATGTCACTTGACTTCCATCCGAACAAAGAAGATATGATTTGCTCCTGTGATGGTG
taatcatttgattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttattgtgatatcaattcaaaaaaaaactattgcgatagtgattgcaagatgttccataacctaaaaccatgtagtgactaatcatttgattatgtgcagACAAGTTATTCACTCCGTACTTTCACGGGTCATTCAGCATCTGTTATGTCACTTGACTTCCATCCGAACAAAGAAGATATGATTTGCTCCTGTGATGGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG