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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgcatagtttgcatgtcgagatgatccagaagctgaaaatacttagtgtgttattcgttgccttggtgacactgctaagattgtttttggtgtttgtagGTGCTGTTCTTGCATGAATTTTGCACTCTCAGTAAGAGTTTGCCGCTTGTTCAACAATTACGACTGTTCCGGTAAGTATTTGTTTGGTCCTTTTCTTTTT

Basic information

species Oryza sativa
transcript LOC_Os01g23590.2
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86854470|gb|CI256592.1|CI256592
EST:     TTGCTAGGATGAGATTATCAAATATTTCTATGGAATCAAAAAGAGAATTG                         GTGCTGTTCTTGCATGAATTTTGCACTCTCAGTAAGAGTTTGCCGCTTGTT
genomic: TTGCTAGGATGAGATTATCAAATATTTCTATGGAATCAAAAAGAGAATTGgtgagcacac ... gtgtttgtagGTGCTGTTCTTGCATGAATTTTGCACTCTCAGTAAGAGTTTGCCGCTTGTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtgtgttattcgttgccttggtgacactgctaagattgtttttggtgtttgtagGTGCTGTTCTTGCATGAATTTTGCACTCTCAGTAAGAGTTTGCCGCTTGTTCAACAATTACGACTGTTCCGGTAAGTATTTGTTTGGTCCTTTTCTTTTT
                                   attgttttt  TA-rich tract