1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gttaattctgaataactcagctcacctctccacacatacgcattaattctttagtaaacttcactaaatttctaaactcatcattcattcctacagTGAATGAGACGGATATATGTAGTCCATCAGCAAGTCTTTTGTGTATATGTACAGAACGAACCACCCAAGCTAGAAGTGTAGAAGCAACAAGTTAGCTGCA
species | Oryza sativa |
transcript | LOC_Os01g08890.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: ATTGCCAAAAAATTGTTCAAGGATAGTACCCAGAAGAAACCCACTGACAG TGAATGAGACGGATATATGTAGTCCATCAGCAAGTCTTTTGTGTATATGTAEST: gi|88523235|gb|CI451042.1|CI451042
genomic: ATTGCCAAAAAATTGTTCAAGGATAGTACCCAGAAGAAACCCACTGACAGgttaattctg ... attcctacagTGAATGAGACGGATATATGTAGTCCATCAGCAAGTCTTTTGTGTATATGTA
EST: ATTGCCAAAAAATTGTTCAAGGATAGTACCCAGAAGAAACCCACTGACAG TGAATGAGACGGATATATGTAGTCCATCAGCAAGTCTTTTGTGTATATGTAEST: gi|86892886|gb|CI318829.1|CI318829
genomic: ATTGCCAAAAAATTGTTCAAGGATAGTACCCAGAAGAAACCCACTGACAGgttaattctg ... attcctacagTGAATGAGACGGATATATGTAGTCCATCAGCAAGTCTTTTGTGTATATGTA
EST: ATTGCCAAAAAATTGTTCAAGGATAGTACCCAGAAGAAACCCACTGACAG TGAATGAGACGGATATATGTAGTCCATCAGCAAGTCTTTTGTGTATATGTA
genomic: ATTGCCAAAAAATTGTTCAAGGATAGTACCCAGAAGAAACCCACTGACAGgttaattctg ... attcctacagTGAATGAGACGGATATATGTAGTCCATCAGCAAGTCTTTTGTGTATATGTA
attaattctttagtaaacttcactaaatttctaaactcatcattcattcctacagTGAATGAGACGGATATATGTAGTCCATCAGCAAGTCTTTTGTGTATATGTACAGAACGAACCACCCAAGCTAGAAGTGTAGAAGCAACAAGTTAGCTGCA
ttctaaa putative branch site (score: 7)
ttcattcct putative PPT
actaaatttctaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttaattctgaataactcagctcacctctccacacatacgcattaattctttagtaaacttcactaaatttctaaactcatcattcattcctacagTGAATGAGACGGATATATGTAGTCCATCAGCAAGTCTTTTGTGTATATGTACAGAACGAACCACCCAAGCTAGAAGTGTAGAAGCAACAAGTTAGCTGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC