1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
gtttgtttcaaggaagtttacggtagacttttgttcaaactacaactagtatttataccctttctttgcagGGAGGAAAGAATATTAAGAAAAGCTGAAATGGAAGCTACAAAG
species | Oryza sativa |
transcript | LOC_Os12g29660.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: TTGATTGAGGAACTTGAAGATCAAATTTCTACCATAATTCAAGAAGAAAG GGAGGAAAGAATATTAAGAAAAGCTGAAATGGAAGCTACAAAGEST: gi|58693792|gb|CK082479.1|CK082479
genomic: TTGATTGAGGAACTTGAAGATCAAATTTCTACCATAATTCAAGAAGAAAGgtttgtttca ... ttctttgcagGGAGGAAAGAATATTAAGAAAAGCTGAAATGGAAGCTACAAAG
EST: TTGATTGAGGAACTTGAAGATCAAATTTCTACCATAATTCAAGAAGAAAG GGAGGAAAGAATATTAAGAAAAGCTGAAATGGAAGCTACAAAGEST: gi|29642473|gb|CB647480.1|CB647480
genomic: TTGATTGAGGAACTTGAAGATCAAATTTCTACCATAATTCAAGAAGAAAGgtttgtttca ... ttctttgcagGGAGGAAAGAATATTAAGAAAAGCTGAAATGGAAGCTACAAAG
EST: TTGATTGAGGAACTTGAAGATCAAATTTCTACCATAATTCAAGAAGAAAG GGAGGAAAGAATATTAAGAAAAGCTGAAATGGAAGCTACAAAG
genomic: TTGATTGAGGAACTTGAAGATCAAATTTCTACCATAATTCAAGAAGAAAGgtttgtttca ... ttctttgcagGGAGGAAAGAATATTAAGAAAAGCTGAAATGGAAGCTACAAAG
tttacggtagacttttgttcaaactacaactagtatttataccctttctttgcagGGAGGAAAGAATATTAAGAAAAGCTGAAATGGAAGCTACAAAG
tttataccctttcttt CT-rich tract
aactagtatttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtttcaaggaagtttacggtagacttttgttcaaactacaactagtatttataccctttctttgcagGGAGGAAAGAATATTAAGAAAAGCTGAAATGGAAGCTACAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG