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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtatacatttctaaccagggcatcacaattaaggtcaaaatgaatgtaatatggtttgattacccacttaagtaagaagaggacacaatatataaactaatatgattgtatcattcaaacacaaaaaatctaaaaaattgaggttgaattgcatttaactttgtttccttcccttttctttttctttgtttgcagGGTGCTGGGCACACTGTTCCTGAATACAAACCACAAGAATCATTGGCTTTCTATAGCCGCTGGCTTGCTGGTTCTAAATTGTAAATGCTTGTGAATCCGA

Basic information

species Oryza sativa
transcript LOC_Os12g15470.2
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86537567|gb|CI177773.1|CI177773
EST:     GTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAG                         GGTGCTGGGCACACTGTTCCTGAATACTAACCACAAGAATCATTGGCTTTC
genomic: GTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAGgtgagtatac ... ttgtttgcagGGTGCTGGGCACACTGTTCCTGAATACAAACCACAAGAATCATTGGCTTTC
EST: gi|88849809|gb|CI001515.1|CI001515
EST:     GTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAG                         GGTGCTGGGCACACTGTTCCTGAATACAAACCACAAGAATCATTGGCTTTC
genomic: GTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAGgtgagtatac ... ttgtttgcagGGTGCTGGGCACACTGTTCCTGAATACAAACCACAAGAATCATTGGCTTTC
EST: gi|29638179|gb|CB643188.1|CB643188
EST:     GTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAG                         GGTGCTGGGCACACTGTTCCTGAATACAAACCACAAGAATCATTGGCTTTC
genomic: GTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAGgtgagtatac ... ttgtttgcagGGTGCTGGGCACACTGTTCCTGAATACAAACCACAAGAATCATTGGCTTTC
EST: gi|88484642|gb|CI421913.1|CI421913
EST:     GTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAG                         GGTGCTGGGCACACTGTTCCTGAATACAAACCACAAGAATCATTGGCTTTC
genomic: GTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAGgtgagtatac ... ttgtttgcagGGTGCTGGGCACACTGTTCCTGAATACAAACCACAAGAATCATTGGCTTTC
EST: gi|86862301|gb|CI330790.1|CI330790
EST:     GTACACCCAAGGATATGAACATGGCCTCACCCTTGCTACCATTAAG                         GGTGCTGGGCACACTGTTCCTGAATACAAACCACAAGAATCATTGGCTTTC
genomic: GTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAGgtgagtatac ... ttgtttgcagGGTGCTGGGCACACTGTTCCTGAATACAAACCACAAGAATCATTGGCTTTC
EST: gi|86501069|gb|CI143702.1|CI143702
EST:     GTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAG                         GGTGCTGGGCACACTGTTCCTGAATACAAACCACAAGAATCATTGGCTTTC
genomic: GTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAGgtgagtatac ... ttgtttgcagGGTGCTGGGCACACTGTTCCTGAATACAAACCACAAGAATCATTGGCTTTC
EST: gi|86485628|gb|CI128261.1|CI128261
EST:     GTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAG                         GGTGCTGGGCACACTGTTCCTGAATACAAACCACAAGAATCATTGGCTTTC
genomic: GTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAGgtgagtatac ... ttgtttgcagGGTGCTGGGCACACTGTTCCTGAATACAAACCACAAGAATCATTGGCTTTC
EST: gi|88903221|gb|CI088759.1|CI088759
EST:     GTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAG                         GGTGCTGGGCACACTGTTCCTGAATACAAACCACAAGAATCATTGGCTTTC
genomic: GTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAGgtgagtatac ... ttgtttgcagGGTGCTGGGCACACTGTTCCTGAATACAAACCACAAGAATCATTGGCTTTC
EST: gi|86537559|gb|CI177765.1|CI177765
EST:     GTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAG                         GGTGCTGGGCACACTGTTCCTGAATACAAACCACAAGAATCATTGGCTTTC
genomic: GTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAGgtgagtatac ... ttgtttgcagGGTGCTGGGCACACTGTTCCTGAATACAAACCACAAGAATCATTGGCTTTC
EST: gi|89166421|gb|CI103511.1|CI103511
EST:     GTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAG                         GGTGCTGGGCACACTGTTCCTGAATACAAACCACAAGAATCATTGGCTTTC
genomic: GTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAGgtgagtatac ... ttgtttgcagGGTGCTGGGCACACTGTTCCTGAATACAAACCACAAGAATCATTGGCTTTC
EST: gi|29644492|gb|CB649499.1|CB649499
EST:     GTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAG                         GGTGCTGGGCACACTGTTCCTGAATACAAACCACAAGAATCATTGGCTTTC
genomic: GTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAGgtgagtatac ... ttgtttgcagGGTGCTGGGCACACTGTTCCTGAATACAAACCACAAGAATCATTGGCTTTC
EST: gi|29668082|gb|CB664357.1|CB664357
EST:     GTACACCCAAGGATATGAACATGGCCTCACCTTTGTTACCATTAAG                         GGTGCTGGGCACACTGTTCCTGAATACAAACCACAAGAATCATTGGCTTTC
genomic: GTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAGgtgagtatac ... ttgtttgcagGGTGCTGGGCACACTGTTCCTGAATACAAACCACAAGAATCATTGGCTTTC
EST: gi|86883893|gb|CI328817.1|CI328817
EST:     GTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAG                         GGTGCTGGGCACACTGTTCCTGAATACAAACCACAAGAATCATTGGCTTTC
genomic: GTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAGgtgagtatac ... ttgtttgcagGGTGCTGGGCACACTGTTCCTGAATACAAACCACAAGAATCATTGGCTTTC
EST: gi|88245431|gb|CI245280.1|CI245280
EST:     GTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAG                         GGTGCTGGGCACACTGTTCCTGAATACAAACCACAAGAATCATTGGCTTTC
genomic: GTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAGgtgagtatac ... ttgtttgcagGGTGCTGGGCACACTGTTCCTGAATACAAACCACAAGAATCATTGGCTTTC
EST: gi|29659837|gb|CB656112.1|CB656112
EST:     GTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAG                         GGTGCTGGGCACACTGTTCCTGAATACAAACCACAAGAATCATTGGCTTTC
genomic: GTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAGgtgagtatac ... ttgtttgcagGGTGCTGGGCACACTGTTCCTGAATACAAACCACAAGAATCATTGGCTTTC
EST: gi|86899737|gb|CI327554.1|CI327554
EST:     GTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAG                         GGTGCTGGGCACACTGTTCCTGAATACAAACCACAAGAATCATTGGCTTTC
genomic: GTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAGgtgagtatac ... ttgtttgcagGGTGCTGGGCACACTGTTCCTGAATACAAACCACAAGAATCATTGGCTTTC
EST: gi|88957594|gb|CI011523.1|CI011523
EST:     GTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAG                         GGTGCTGGGCACACTGTTCCTGAATACAAACCACAAGAATCATTGGCTTTC
genomic: GTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAGgtgagtatac ... ttgtttgcagGGTGCTGGGCACACTGTTCCTGAATACAAACCACAAGAATCATTGGCTTTC
EST: gi|88901595|gb|CI001703.1|CI001703
EST:     GTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAG                         GGTGCTGGGCACACTGTTCCTGAATACAAACCACAAGAATCATTGGCTTTC
genomic: GTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAGgtgagtatac ... ttgtttgcagGGTGCTGGGCACACTGTTCCTGAATACAAACCACAAGAATCATTGGCTTTC
EST: gi|86594292|gb|CI251164.1|CI251164
EST:     GTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAG                         GGTGCTGGGCACACTGTTCCTGAATACAAACCACAAGAATCATTGGCTTTC
genomic: GTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAGgtgagtatac ... ttgtttgcagGGTGCTGGGCACACTGTTCCTGAATACAAACCACAAGAATCATTGGCTTTC
EST: gi|88248338|gb|CI248187.1|CI248187
EST:     GTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAG                         GGTGCTGGGCACACTGTTCCTGAATACAAACCACAAGAATCATTGGCTTTC
genomic: GTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAGgtgagtatac ... ttgtttgcagGGTGCTGGGCACACTGTTCCTGAATACAAACCACAAGAATCATTGGCTTTC
EST: gi|86482898|gb|CI125531.1|CI125531
EST:     GTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAG                         GGTGCTGGGCACACTGTTCCTGAATACAAACCACAAGAATCATTGGCTTTC
genomic: GTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAGgtgagtatac ... ttgtttgcagGGTGCTGGGCACACTGTTCCTGAATACAAACCACAAGAATCATTGGCTTTC
EST: gi|86482776|gb|CI125409.1|CI125409
EST:     GTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAG                         GGTGCTGGGCACACTGTTCCTGAATACAAACCACAAGAATCATTGGCTTTC
genomic: GTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAGgtgagtatac ... ttgtttgcagGGTGCTGGGCACACTGTTCCTGAATACAAACCACAAGAATCATTGGCTTTC
EST: gi|86259349|gb|CI008026.1|CI008026
EST:     GTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAG                         GGTGCTGGGCACACTGTTCCTGAATACAAACCACAAGAATCATTGGCTTTC
genomic: GTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAGgtgagtatac ... ttgtttgcagGGTGCTGGGCACACTGTTCCTGAATACAAACCACAAGAATCATTGGCTTTC
EST: gi|29661784|gb|CB658059.1|CB658059
EST:     GTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAG                         GGTGCTGGGCACACTGTTCCTGAATACAAACCACAAGAATCATTGGCTTTC
genomic: GTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAGgtgagtatac ... ttgtttgcagGGTGCTGGGCACACTGTTCCTGAATACAAACCACAAGAATCATTGGCTTTC
EST: gi|86842643|gb|CI341788.1|CI341788
EST:     GTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAG                         GGTGCTGGGCACACTGTTCCTGAATACAAACCACAAGAATCATTGGCTTTC
genomic: GTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAGgtgagtatac ... ttgtttgcagGGTGCTGGGCACACTGTTCCTGAATACAAACCACAAGAATCATTGGCTTTC
EST: gi|33684072|gb|CF312311.1|CF312311
EST:     GTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAG                         GGTGCTGGGCACACTGTTCCTGAATACAAACCACAAGAATCATTGGCTTTC
genomic: GTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAGgtgagtatac ... ttgtttgcagGGTGCTGGGCACACTGTTCCTGAATACAAACCACAAGAATCATTGGCTTTC
EST: gi|88995442|gb|CI022765.1|CI022765
EST:     GTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAG                         GGTGCTGGGCACACTGTTCCTGAATACAAACCACAAGAATCATTGGCTTTC
genomic: GTACACCCAAGGATATGAACATGGCCTCACCTTTGCTACCATTAAGgtgagtatac ... ttgtttgcagGGTGCTGGGCACACTGTTCCTGAATACAAACCACAAGAATCATTGGCTTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aggttgaattgcatttaactttgtttccttcccttttctttttctttgtttgcagGGTGCTGGGCACACTGTTCCTGAATACAAACCACAAGAATCATTGGCTTTCTATAGCCGCTGGCTTGCTGGTTCTAAATTGTAAATGCTTGTGAATCCGA
            atttaac  putative branch site (score: 3)
             tttaactttgtttcct  CT-rich tract
            atttaactttgttt  TA-rich tract