1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...tggtttatagtctgctattgtacctgctcttaggtatgtataaatcggtgctttgtaatgtttatttgatcatataaattgtaaattcaacgttgtgcagGTGACCAGATGGTATTTCTTCTACTGAATCTGACCGAGGTCATTGGGCTCATGTTAACCTTCAAACCTTTCTTGGCTGTTCCTCAACAATATAAATAGAA
species | Oryza sativa |
transcript | LOC_Os12g03860.4 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: ATTTTCTTGGGCACAAAAGAGACAACATGTGGCATTTTTTCCAG GTGACCAGATGGTATTTCTTCTACTGAATCTGACCGAGGTCATTGGGCTCAEST: gi|88511669|gb|CI439175.1|CI439175
genomic: ATTTTCTTGGGCACAAAAGAGACAACATGTGGCATTTTTTCCAGgtaaataact ... cgttgtgcagGTGACCAGATGGTATTTCTTCTACTGAATCTGACCGAGGTCATTGGGCTCA
EST: ATTTTCTTGGGCACAAAAGAGACAACATGTGGCATTTTTTCCAG GTGACCAGATGGTATTTCTTCTACTGAATCTGACCGAGGTCATTGGGCTCAEST: gi|88246093|gb|CI245942.1|CI245942
genomic: ATTTTCTTGGGCACAAAAGAGACAACATGTGGCATTTTTTCCAGgtaaataact ... cgttgtgcagGTGACCAGATGGTATTTCTTCTACTGAATCTGACCGAGGTCATTGGGCTCA
EST: ATTTTCTTGGGCACAAAAGAGACAACATGTGGCATTTTTTCCAG GTGACCAGATGGTATTTCTTCTACTGAATCTGACCGAGGTCATTGGGCTCA
genomic: ATTTTCTTGGGCACAAAAGAGACAACATGTGGCATTTTTTCCAGgtaaataact ... cgttgtgcagGTGACCAGATGGTATTTCTTCTACTGAATCTGACCGAGGTCATTGGGCTCA
cggtgctttgtaatgtttatttgatcatataaattgtaaattcaacgttgtgcagGTGACCAGATGGTATTTCTTCTACTGAATCTGACCGAGGTCATTGGGCTCATGTTAACCTTCAAACCTTTCTTGGCTGTTCCTCAACAATATAAATAGAA
atttgat putative branch site (score: 5)
tttgtaatgtttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggtttatagtctgctattgtacctgctcttaggtatgtataaatcggtgctttgtaatgtttatttgatcatataaattgtaaattcaacgttgtgcagGTGACCAGATGGTATTTCTTCTACTGAATCTGACCGAGGTCATTGGGCTCATGTTAACCTTCAAACCTTTCTTGGCTGTTCCTCAACAATATAAATAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - -gtctgct
- - - - - - - - - - - cctgctc
- - - - - - - - - - - - - - - - - tatgtat
- - - - - - - - - - - - - - - - - - - - - - - ggtgctt
- - - - - - - - - - - - - - - - - - - - - - - - - - -tgtaatg