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gtaagtgctgagcgcatcattgtgcttagaaaatcctaataattaacacccttttccctttgtagaaataactcctggcgtaactgatcactttataccatatgaattggcagATTTCCAGAATGCACCTCCTCTGTGCTTCAAGCTCTGGTGCTGTTCAAACAACTACACCCTAGTTACCGTATTAAAGAGATAGAAAAATGTGTCAGAAAC
species | Oryza sativa |
transcript | LOC_Os11g35710.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: GTTCTCAGTCCTTGTGAGAG-TTTCCAAACATAGTGGTTGATTATCC ATTTCCAGAATGCACCTCCTCTGTGCTTCAAGCTCTGGTGCTGTTCAAACAEST: gi|163918519|gb|EG711629.1|EG711629
genomic: GTTCTCAGTCCTTGTGAGAGTTTTCCAAACATAGTGGTTGATTATCCgtaagtgctg ... gaattggcagATTTCCAGAATGCACCTCCTCTGTGCTTCAAGCTCTGGTGCTGTTCAAACA
EST: GTTCTCAGTCCTTGTGAGAGTTTTCCAAACATAGTGGTTGATTATCC ATTTCCAGAATGCACCTCCTCTGTGCTTCAAGCTCTGGTGCTGTTCAAACAEST: gi|163918585|gb|EG711635.1|EG711635
genomic: GTTCTCAGTCCTTGTGAGAGTTTTCCAAACATAGTGGTTGATTATCCgtaagtgctg ... gaattggcagATTTCCAGAATGCACCTCCTCTGTGCTTCAAGCTCTGGTGCTGTTCAAACA
EST: GTTCTCAGTCCTTGTGAGAGTTTTCCAAACATAGTGGTTGATTATCC ATTTCCAGAATGCACCTCCTCTGTGCTTCAAGCTCTGGTGCTGTTCAAACA
genomic: GTTCTCAGTCCTTGTGAGAGTTTTCCAAACATAGTGGTTGATTATCCgtaagtgctg ... gaattggcagATTTCCAGAATGCACCTCCTCTGTGCTTCAAGCTCTGGTGCTGTTCAAACA
tttgtagaaataactcctggcgtaactgatcactttataccatatgaattggcagATTTCCAGAATGCACCTCCTCTGTGCTTCAAGCTCTGGTGCTGTTCAAACAACTACACCCTAGTTACCGTATTAAAGAGATAGAAAAATGTGTCAGAAAC
atatgaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgctgagcgcatcattgtgcttagaaaatcctaataattaacacccttttccctttgtagaaataactcctggcgtaactgatcactttataccatatgaattggcagATTTCCAGAATGCACCTCCTCTGTGCTTCAAGCTCTGGTGCTGTTCAAACAACTACACCCTAGTTACCGTATTAAAGAGATAGAAAAATGTGTCAGAAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA