1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
...atctaatagtttgtagctaaatatggtccatgtaattttgacttttttttctactatttgatctatttctaatgcaagtgatattgaacattggaaatagGTTTTGAAAGGCCATATTGCACTAGACAGTGCTGTATTTCCCAATGGAACGACAG
species | Oryza sativa |
transcript | LOC_Os11g33330.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: CTGTACATTTTGGGAAACCCTCTGAGCATGAGAAGTCATGCTACACAGCT GTTTTGAAAGGCCATATTGCACTAGACAGTGCTGTATTTCCCAATGGAACGEST: gi|33794779|gb|CF323269.1|CF323269
genomic: CTGTACATTTTGGGAAACCCTCTGAGCATGAGAAGTCATGCTACACAGCTgtaagtttta ... ttggaaatagGTTTTGAAAGGCCATATTGCACTAGACAGTGCTGTATTTCCCAATGGAACG
EST: CTGTACATTTTGGGAAACCCTCTGA-CATGAGAAGTCATGCTACACAGCT GTTTTGAAAGGCCATATTGCACTAGACAGTGCTGTATTTCCCAATGGAACGEST: gi|38475630|gb|CF959763.1|CF959763
genomic: CTGTACATTTTGGGAAACCCTCTGAGCATGAGAAGTCATGCTACACAGCTgtaagtttta ... ttggaaatagGTTTTGAAAGGCCATATTGCACTAGACAGTGCTGTATTTCCCAATGGAACG
EST: ATGAGAAGTCATGCTACACAGCT GTTTTGAAAGGCCATATTGCACTAGACAGTGCTGTATTTCCCAATGGAACGEST: gi|88574886|gb|CI666655.1|CI666655
genomic: ATGAGAAGTCATGCTACACAGCTgtaagtttta ... ttggaaatagGTTTTGAAAGGCCATATTGCACTAGACAGTGCTGTATTTCCCAATGGAACG
EST: CTGTACATTTTGGGAAACCCTCTGAGCATGAGAAGTCATGCTACACAGCT GTTTTGAAAGGCCATATTGCACTAGACAGTGCTGTATTTCCCAATGGAACG
genomic: CTGTACATTTTGGGAAACCCTCTGAGCATGAGAAGTCATGCTACACAGCTgtaagtttta ... ttggaaatagGTTTTGAAAGGCCATATTGCACTAGACAGTGCTGTATTTCCCAATGGAACG
tttttctactatttgatctatttctaatgcaagtgatattgaacattggaaatagGTTTTGAAAGGCCATATTGCACTAGACAGTGCTGTATTTCCCAATGGAACGACAG
ttctaat putative branch site (score: 55)
tatttgatctattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atctaatagtttgtagctaaatatggtccatgtaattttgacttttttttctactatttgatctatttctaatgcaagtgatattgaacattggaaatagGTTTTGAAAGGCCATATTGCACTAGACAGTGCTGTATTTCCCAATGGAACGACAG
- - - - - -tgtagct
- - - - - - - - - - - - -gtccatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgcaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgaaca