1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...tgtttctctgtaccattacagttctcttgcatctcgacatcctaggatattggatacacagaaagtagtcattaatgactatgctataatcttattccagGTATTTGTCAGTGAGTATGCTGTCAATGAACAAAGGGATGCTGGTAAAGGAAGCCTTCTTGCTTCACTGGCTGAGGCTGCTTTCCTTACTGGGTTAGAGA
species | Oryza sativa |
transcript | LOC_Os11g03780.2 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: TTTTTATCATGAAGAATAAGTTTGATAGGACATCACGCATTGGGCCTAAG GTATTTGTCAGTGAGTATGCTGTCAATGAACAAAGGGATGCTGGTAAAGGA
genomic: TTTTTATCATGAAGAATAAGTTTGATAGGACATCACGCATTGGGTCTAAGgtatttttta ... cttattccagGTATTTGTCAGTGAGTATGCTGTCAATGAACAAAGGGATGCTGGTAAAGGA
gatattggatacacagaaagtagtcattaatgactatgctataatcttattccagGTATTTGTCAGTGAGTATGCTGTCAATGAACAAAGGGATGCTGGTAAAGGAAGCCTTCTTGCTTCACTGGCTGAGGCTGCTTTCCTTACTGGGTTAGAGA
cattaat putative branch site (score: 49)
tcttattcc putative PPT
tataatcttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtttctctgtaccattacagttctcttgcatctcgacatcctaggatattggatacacagaaagtagtcattaatgactatgctataatcttattccagGTATTTGTCAGTGAGTATGCTGTCAATGAACAAAGGGATGCTGGTAAAGGAAGCCTTCTTGCTTCACTGGCTGAGGCTGCTTTCCTTACTGGGTTAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
tgtttct
- - - -ctgtacc
- - - - - - - - - - - - tcttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - cacagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgcta