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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatctgactcatatttcagaatcactatcacagattgtggatgtggagtcatcattttttccatgaaaatgatctctcatgtagCCTGCTTTCACAAGGCTTGGCCGGCATCCAAGCAGTTAATGTACCTGGAGTTGAAAAT

Basic information

species Oryza sativa
transcript LOC_Os10g36830.1
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86482322|gb|CI124955.1|CI124955
EST:     AATGTTTACTCCACAAATGATTGGATTCTCGGTATCACTTTTCGAGCAAG                         CCTGCTTTCACAAGGCTTGGCCGGCATCCAAGCAGTTAATGTACCTGGAGT
genomic: AATGTTTACTCCACAAATGATTGGATTCTCGGTATCACTTTTCGAGCAAGgtaaatctga ... tctcatgtagCCTGCTTTCACAAGGCTTGGCCGGCATCCAAGCAGTTAATGTACCTGGAGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acagattgtggatgtggagtcatcattttttccatgaaaatgatctctcatgtagCCTGCTTTCACAAGGCTTGGCCGGCATCCAAGCAGTTAATGTACCTGGAGTTGAAAAT
                                           tctctcat  CT-rich tract
                     atcatttttt  TA-rich tract