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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aacagcttgaacatctgatgcactcctgttcgtagctcccgtagaacatctgatgatagtgctcatggagatttgaccccttgctccatcctgaacgcagGGCATGGTGATGATGACTCGGGAGTCGGGGCTACAATAAACACAGTTACACAGACCAATCTACGGTATCCATTGATCTACTCTAGTACAATTAAGGTGGT

Basic information

species Oryza sativa
transcript LOC_Os10g36780.1
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88511365|gb|CI438871.1|CI438871
EST:     ATCGCCAGCCACATCAGCTTGTGGCTATCACAATGCCAAGAACCAACAAG                         GGCATGGTGATGATGACTCGGGAGTCGGGGCTACAATAAACACAGTTACAC
genomic: ATCGCCAGCCACATCAGCTTGTGGCTATCACAATGCCAAGAACCAACAAGgtcagggtct ... ctgaacgcagGGCATGGTGATGATGACTCGGGAGTCGGGGCTACAATAAACACAGTTACAC
EST: gi|88198073|gb|CI197923.1|CI197923
EST:     ATCGCCAGCCACATCAGCTTGTGGCTATCACAATGCCAAGAACCAACAAG                         GGCATGGTGATGATGACTCGGGAGTCGGGGCTACAATAAACACAGTTACAC
genomic: ATCGCCAGCCACATCAGCTTGTGGCTATCACAATGCCAAGAACCAACAAGgtcagggtct ... ctgaacgcagGGCATGGTGATGATGACTCGGGAGTCGGGGCTACAATAAACACAGTTACAC
EST: gi|157649959|gb|EX449593.1|EX449593
EST:     ATCGCCAGCCACATCAGCTTGTGGCTATCACAATACCAAAAACCAACAAG                         GGCATGGTGATGATGACTCGGGAGTCGGGGCTACAATAAACACAGTTACAC
genomic: ATCGCCAGCCACATCAGCTTGTGGCTATCACAATGCCAAGAACCAACAAGgtcagggtct ... ctgaacgcagGGCATGGTGATGATGACTCGGGAGTCGGGGCTACAATAAACACAGTTACAC
EST: gi|88263249|gb|CI367023.1|CI367023
EST:     ATCGCCAGCCACATCAGCTTGTGGCTATCACAATGCCAAGAACCAACAAG                         GGCATGGTGATGATGACTCGGGAGTCGGGGCTACAATAAACACAGTTACAC
genomic: ATCGCCAGCCACATCAGCTTGTGGCTATCACAATGCCAAGAACCAACAAGgtcagggtct ... ctgaacgcagGGCATGGTGATGATGACTCGGGAGTCGGGGCTACAATAAACACAGTTACAC
EST: gi|86904683|gb|CI321591.1|CI321591
EST:     ATCGCCAGCCACATCAGCTTGTGGCTATCACAATGCCAAGAACCAACAAG                         GGCATGGTGATGATGACTCGGGAGTCGGGGCTACAATAAACACAGTTACAC
genomic: ATCGCCAGCCACATCAGCTTGTGGCTATCACAATGCCAAGAACCAACAAGgtcagggtct ... ctgaacgcagGGCATGGTGATGATGACTCGGGAGTCGGGGCTACAATAAACACAGTTACAC
EST: gi|88968629|gb|CI098843.1|CI098843
EST:     ATCGCCAGCCACATCAGCTTGTGGCTATCACAATGCCAAGAACCAACAAG                         GGCATGGTGATGATGACTCGGGAGTCGGGGCTACAATAAACACAGTTACAC
genomic: ATCGCCAGCCACATCAGCTTGTGGCTATCACAATGCCAAGAACCAACAAGgtcagggtct ... ctgaacgcagGGCATGGTGATGATGACTCGGGAGTCGGGGCTACAATAAACACAGTTACAC
EST: gi|88511080|gb|CI438586.1|CI438586
EST:     ATCNCCAGCCACATCAGCTTGTGGCTATCACAATGCCAAGAACCAACAAG                         GGCATGGTGATGATGACTCGGGAGTCGGGGGGTACAATAAACACAGTTACA
genomic: ATCGCCAGCCACATCAGCTTGTGGCTATCACAATGCCAAGAACCAACAAGgtcagggtct ... ctgaacgcagGGCATGGTGATGATGACTCGGGAGTC-GGGGCTACAATAAACACAGTTACA
EST: gi|88519380|gb|CI447034.1|CI447034
EST:     ATCGCCAGCCACATCAGCTTGTGGCTATCACAATGCCAAGAACCAACAAG                         GGCATGGTGATGATGACTCGGGAGTCGGGGCTACAATAAACACAGTTACAC
genomic: ATCGCCAGCCACATCAGCTTGTGGCTATCACAATGCCAAGAACCAACAAGgtcagggtct ... ctgaacgcagGGCATGGTGATGATGACTCGGGAGTCGGGGCTACAATAAACACAGTTACAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acatctgatgatagtgctcatggagatttgaccccttgctccatcctgaacgcagGGCATGGTGATGATGACTCGGGAGTCGGGGCTACAATAAACACAGTTACACAGACCAATCTACGGTATCCATTGATCTACTCTAGTACAATTAAGGTGGT
                         atttgac  putative branch site (score: 4)
                               ccccttgctccatcct  CT-rich tract