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gttcctcacctcacccattaatatttacttctaggatacccaaacataaatgcctgatatttatatttttcttattacagCCGAATGTACTCCTGAAGATGTATTCAAATATGTTGGAGACAATGCAGTATTTGCCAGTGGAAGCCCTTTCAGTAATGTCACTTTAG
species | Oryza sativa |
transcript | LOC_Os10g35960.2 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: CGATTCCCCTCGTCCTGCAATTTTTGCAATGTCCAACCCAACTACTAAAG CCGAATGTACTCCTGAAGATGTATTCAAATATGTTGGAGACAATGCAGTATEST: gi|58601869|gb|CK012397.1|CK012397
genomic: CGATTCCCCTCGTCCTGCAATTTTTGCAATGTCCAACCCAACTACTAAAGgttcctcacc ... cttattacagCCGAATGTACTCCTGAAGATGTATTCAAATATGTTGGAGACAATGCAGTAT
EST: CGATTCCCCTCGTCCTGCAATTTTTGCAATGTCCAAGCCAACTACTAAAG CCGAATGTACTCCTGAAGATGTATTCAAATATGTTGGAGACAATGCAGTEST: gi|4715753|gb|AU056869.1|AU056869
genomic: CGATTCCCCTCGTCCTGCAATTTTTGCAATGTCCAACCCAACTACTAAAGgttcctcacc ... cttattacagCCGAATGTACTCCTGAAGATGTATTCAAATATGTTGGAGACAATGCAGT
EST: CGATTCCCCTCGTCCTGCAATTTTTGCAATGTCCAACCCAACTACTAAAG CCGAATGTACTCCTGAAGATGTATTCAAATATGTTGGAGACAATGCAGTATEST: gi|25799623|gb|CA755584.1|CA755584
genomic: CGATTCCCCTCGTCCTGCAATTTTTGCAATGTCCAACCCAACTACTAAAGgttcctcacc ... cttattacagCCGAATGTACTCCTGAAGATGTATTCAAATATGTTGGAGACAATGCAGTAT
EST: CGATTCCCCTCGTCCTGCAATTTTTGCAATGTCCAACCCAACTACTAAAG CCGAATGTACTCCTGAAGATGTATTCAAATATGTTGGAGACAATGCAGTAT
genomic: CGATTCCCCTCGTCCTGCAATTTTTGCAATGTCCAACCCAACTACTAAAGgttcctcacc ... cttattacagCCGAATGTACTCCTGAAGATGTATTCAAATATGTTGGAGACAATGCAGTAT
tacttctaggatacccaaacataaatgcctgatatttatatttttcttattacagCCGAATGTACTCCTGAAGATGTATTCAAATATGTTGGAGACAATGCAGTATTTGCCAGTGGAAGCCCTTTCAGTAATGTCACTTTAG
gcctgat putative branch site (score: 108)
tttatatttttctt CT-rich tract
tgatatttatattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcctcacctcacccattaatatttacttctaggatacccaaacataaatgcctgatatttatatttttcttattacagCCGAATGTACTCCTGAAGATGTATTCAAATATGTTGGAGACAATGCAGTATTTGCCAGTGGAAGCCCTTTCAGTAATGTCACTTTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG