1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...tttgattgtagctggaaggacatctcattccatttttgttatttgtactggagttccattaatcatatgatgcatgaatgtttttttgtttatcttacagTGGAATTTGACTTTAGCGGAAGTTATCTAGCTGTTGGTGGTTCAGATACAAG
species | Oryza sativa |
transcript | LOC_Os10g32880.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: AAACTTTAGGACGATATCACCTTATGACTCAGACACGNCAACAAATTCTG TGGAATTTGACTTTAGCGGAAGTTATCTAGCTGTTGGTGGTTCAGATACAAEST: gi|4879056|gb|AU063355.1|AU063355
genomic: AAACTTTAGGACGATATCACCTTATGACTCAGACACGCCAACAAATTCTGgtaaggaact ... tatcttacagTGGAATTTGACTTTAGCGGAAGTTATCTAGCTGTTGGTGGTTCAGATACAA
EST: AAACTTTAGGACGATATCACCTTATGACTCAGACACGNCAACAAATTCTG TGGAATTTGACTTTAGCGGAAGTTATCTAGCTGTTGGTGGTTCAGATACAAEST: gi|58686960|gb|CK075647.1|CK075647
genomic: AAACTTTAGGACGATATCACCTTATGACTCAGACACGCCAACAAATTCTGgtaaggaact ... tatcttacagTGGAATTTGACTTTAGCGGAAGTTATCTAGCTGTTGGTGGTTCAGATACAA
EST: AAACTTTAGGACGATATCACCTTATGACTCAGACACGCCAACAAATTCTG TGGAATTTGAC
genomic: AAACTTTAGGACGATATCACCTTATGACTCAGACACGCCAACAAATTCTGgtaaggaact ... tatcttacagTGGAATTTGAC
tactggagttccattaatcatatgatgcatgaatgtttttttgtttatcttacagTGGAATTTGACTTTAGCGGAAGTTATCTAGCTGTTGGTGGTTCAGATACAAG
cattaat putative branch site (score: 63)
tttttttgtttatctt putative PPT
aatgtttttttgttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttgattgtagctggaaggacatctcattccatttttgttatttgtactggagttccattaatcatatgatgcatgaatgtttttttgtttatcttacagTGGAATTTGACTTTAGCGGAAGTTATCTAGCTGTTGGTGGTTCAGATACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- tgattgt
- - - - -agctgga
- - - - - - - - - - - - -cattcca
- - - - - - - - - - - - - - - - - - - - - -tgtactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcatga