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gtaagtaccctttacacaatgccagattttggcacattgccacagttgctagaaaatcatgtaatatttatgtacttgtacttacagGCATGATTTGGAGGTGAACGGTGGGAGAGGCCTAATTGTTGACCCAAGAACAAAACACATTTATCAGAGACCGTCTGGCTGATGTAGATATTTCTGCGGT
species | Oryza sativa |
transcript | LOC_Os10g30750.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: TTCAGATATGTACCACGCGAACAACTAACTATTCCTGATTTTGTCTTTCA GCATGATTTGGAGGTGAACGGTGGGAGAGGCCTAATTGTTGACCCAAGAACEST: gi|29672652|gb|CB668927.1|CB668927
genomic: TTCAGATATGTACCACGCGAACAACTAACTATTCCTGATTTTGTCTTTCAgtaagtaccc ... gtacttacagGCATGATTTGGAGGTGAACGGTGGGAGAGGCCTAATTGTTGACCCAAGAAC
EST: TTCAGATATGTACCACGCGAACAACTAACTATTCCTGATTTTGTCTTTCA GCATGATTTGGAGGTGAACGGTGGGAGAGGCCTAATTGTTGACCCAAGAACEST: gi|88456231|gb|CI544767.1|CI544767
genomic: TTCAGATATGTACCACGCGAACAACTAACTATTCCTGATTTTGTCTTTCAgtaagtaccc ... gtacttacagGCATGATTTGGAGGTGAACGGTGGGAGAGGCCTAATTGTTGACCCAAGAAC
EST: TTCAGATATGTACCACGCGAACAACTAACTATTCCTGATTTTGTCTTTCA GCATGATTTGGAGGTGAACGGTGGGAGAGGCCTAATTGTTGACCCAAGAACEST: gi|58656780|gb|CK045460.1|CK045460
genomic: TTCAGATATGTACCACGCGAACAACTAACTATTCCTGATTTTGTCTTTCAgtaagtaccc ... gtacttacagGCATGATTTGGAGGTGAACGGTGGGAGAGGCCTAATTGTTGACCCAAGAAC
EST: TTCAGATATGTACCACGCGAACAACTAACTATTCCTGATTTTGTCTTTCA GCATGATTTGGAGGTGAACGGTGGGAGAGGCCTAATTGTTGACCCAAGAACEST: gi|25803039|gb|CA759000.1|CA759000
genomic: TTCAGATATGTACCACGCGAACAACTAACTATTCCTGATTTTGTCTTTCAgtaagtaccc ... gtacttacagGCATGATTTGGAGGTGAACGGTGGGAGAGGCCTAATTGTTGACCCAAGAAC
EST: TTCAGATATGTACCACGAGAACAACTAACTATTCCTGATTTTGTCTTTCA GCATGATTTGGAGGTGAACGGTGGGAGAGGCCTAATTGTTGACCCAAGAACEST: gi|86828186|gb|CI276799.1|CI276799
genomic: TTCAGATATGTACCACGCGAACAACTAACTATTCCTGATTTTGTCTTTCAgtaagtaccc ... gtacttacagGCATGATTTGGAGGTGAACGGTGGGAGAGGCCTAATTGTTGACCCAAGAAC
EST: TTCAGATATGTACCACGCGAACAACTAACTATTCCTGATTTTGTCTTTCA GCATGATTTGGAGGTGAACGGTGGGAGAGGCCTAATTGTTGACCCAAGAACEST: gi|86603018|gb|CI357382.1|CI357382
genomic: TTCAGATATGTACCACGCGAACAACTAACTATTCCTGATTTTGTCTTTCAgtaagtaccc ... gtacttacagGCATGATTTGGAGGTGAACGGTGGGAGAGGCCTAATTGTTGACCCAAGAAC
EST: TTCAGATATGTACCACGCGAACAACTAACTATTCCTGATTTTGTCTTTCA GCATGATTTGGAGGTGAACGGTGGGAGAGGCCTAATTGTTGACCCAAGAACEST: gi|89192107|gb|CI393464.1|CI393464
genomic: TTCAGATATGTACCACGCGAACAACTAACTATTCCTGATTTTGTCTTTCAgtaagtaccc ... gtacttacagGCATGATTTGGAGGTGAACGGTGGGAGAGGCCTAATTGTTGACCCAAGAAC
EST: TTCAGATATGTACCACGCGAACAACTAACTATTCCTGATTTTGTCTTTCA GCATGAGTTTGGAGGTGAACGGTGGGAGAGGCCTAATTGTTGACCCAAGAA
genomic: TTCAGATATGTACCACGCGAACAACTAACTATTCCTGATTTTGTCTTTCAgtaagtaccc ... gtacttacagGCATGA-TTTGGAGGTGAACGGTGGGAGAGGCCTAATTGTTGACCCAAGAA
cacattgccacagttgctagaaaatcatgtaatatttatgtacttgtacttacagGCATGATTTGGAGGTGAACGGTGGGAGAGGCCTAATTGTTGACCCAAGAACAAAACACATTTATCAGAGACCGTCTGGCTGATGTAGATATTTCTGCGGT
tagaaaatcatgtaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtaccctttacacaatgccagattttggcacattgccacagttgctagaaaatcatgtaatatttatgtacttgtacttacagGCATGATTTGGAGGTGAACGGTGGGAGAGGCCTAATTGTTGACCCAAGAACAAAACACATTTATCAGAGACCGTCTGGCTGATGTAGATATTTCTGCGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT