1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtaaggcacctttcccttcattagctttctgccacacaagttctagcagttcatgttgtctcagcattgatttctgatggaacttcgcagGTTCATGGTGCATTTGCAGGGTTCAGTGGCATCACAACCGGCATATGCAACACGCACAACGTCTACTTGCCAATCTCAGAAGTCATCAAGTCCACAAGGT
species | Oryza sativa |
transcript | LOC_Os10g26570.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: GTGCCAATGCATCCGATGCCATCCTATGCACTGTGCTTGGTCAGAATGCT GTTCATGGTGCATTTGCAGGGTTCAGTGGCATCACAACCGGCATATGCAACEST: gi|3759637|gb|C96895.1|C96895
genomic: GTGCCAATGCATCCGATGCCATCCTATGCACTGTGCTTGGTCAGAATGCTgtaaggcacc ... aacttcgcagGTTCATGGTGCATTTGCAGGGTTCAGTGGCATCACAACCGGCATATGCAAC
EST: TGCCAATGCATCCGATGCCCATCCTATGCACTGTGCTTGGTCANAATGCT GTTCATGGTGCATTTGCCAGGGTTCAGTGGCATCACAACCGGCATATGCAAEST: gi|86851248|gb|CI312649.1|CI312649
genomic: TGCCAATGCATCCGATG-CCATCCTATGCACTGTGCTTGGTCAGAATGCTgtaaggcacc ... aacttcgcagGTTCATGGTGCATTTG-CAGGGTTCAGTGGCATCACAACCGGCATATGCAA
EST: GTGCCAATGCATCCGATGCCATCCTATGCACTGTGCTTGGTCAGAATGCT GTTCATGGTGCATTTGCAGGGTTCAGTGGCATCACAACCGGCATATGCAACEST: gi|58695553|gb|CK084240.1|CK084240
genomic: GTGCCAATGCATCCGATGCCATCCTATGCACTGTGCTTGGTCAGAATGCTgtaaggcacc ... aacttcgcagGTTCATGGTGCATTTGCAGGGTTCAGTGGCATCACAACCGGCATATGCAAC
EST: GTGCCAATGCATCCGATGCCATCCTATGCACTGTGCTTGGTCAGAATGCT GTTCATGGTGCATTTGCAGGGTTCAGTGGCATCACAACCGGCATATGCAAC
genomic: GTGCCAATGCATCCGATGCCATCCTATGCACTGTGCTTGGTCAGAATGCTgtaaggcacc ... aacttcgcagGTTCATGGTGCATTTGCAGGGTTCAGTGGCATCACAACCGGCATATGCAAC
acaagttctagcagttcatgttgtctcagcattgatttctgatggaacttcgcagGTTCATGGTGCATTTGCAGGGTTCAGTGGCATCACAACCGGCATATGCAACACGCACAACGTCTACTTGCCAATCTCAGAAGTCATCAAGTCCACAAGGT
ttctgat putative branch site (score: 2)
attgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaggcacctttcccttcattagctttctgccacacaagttctagcagttcatgttgtctcagcattgatttctgatggaacttcgcagGTTCATGGTGCATTTGCAGGGTTCAGTGGCATCACAACCGGCATATGCAACACGCACAACGTCTACTTGCCAATCTCAGAAGTCATCAAGTCCACAAGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT