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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgatactaattcgaactaaaacaatggcttcatttcagtattcttgtatcaatcaaagcagatgccttcttgtcacagGAAGCTGCTTCGTTAGGAGCAGTTGAAAGTATTTCCATGAAAGATACCCGTATTCTTGTTGATGCCCGAAAGTCAAAGATCTACACTGCGGAGGTATTTT

Basic information

species Oryza sativa
transcript LOC_Os10g10170.4
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g10170.4 (Oryza sativa), 3'ss of exon 13
lower sequence: GRMZM2G335703_T01 (Zea mays), 3'ss of exon 1
gtactgatactaattcgaactaaaacaatggcttcatttcagtattctt--gtatcaatcaaagcag-atgccttcttgtcacagGAAGCTGCTTCGTTAGGAGCAGTTGAAAGTATTTCCATGAAAGATACCCGTATTCTTGTTGATGCCCGAAAGTCAAAGATCTACACTGCGGAGGTATTTT
||| | ||  ||  |   | ||||  |||||||   |||||  ||   |  |||| ||||||||  | ||| ||||||||||||||| |||||||| ||||||||||||| ||| |||||||| ||||| ||||| ||| || |||||||  |||||| |||||||| ||| || |||       
gtaattatgttatcttttattaaag-aatggctctgtttcaacatatgtaggtattaatcaaagttgcatggcttcttgtcacagGAGGCTGCTTCATTAGGAGCAGTTGCAAGCATTTCCATAAAAGAAACCCGGATTGTTATTGATGCTAGAAAGTTAAAGATCTTCACAGCCGAG-------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atggcttcatttcagtattcttgtatcaatcaaagcagatgccttcttgtcacagGAAGCTGCTTCGTTAGGAGCAGTTGAAAGTATTTCCATGAAAGATACCCGTATTCTTGTTGATGCCCGAAAGTCAAAGATCTACACTGCGGAGGTATTTT
                                         ccttcttgtc  CT-rich tract
     ttcattt  TA-rich tract