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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgatactaattcgaactaaaacaatggcttcatttcagtattcttgtatcaatcaaagcagatgccttcttgtcacagGAAGCTGCTTCGTTAGGAGCAGTTGAAAGTATTTCCATGAAAGATACCCGTATTCTTGTTGATGCCCGAAAGTCAAAGATCTACACTGCGGAG

Basic information

species Oryza sativa
transcript LOC_Os10g10170.2
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g10170.1 (Oryza sativa), 3'ss of exon 14
lower sequence: GRMZM2G335703_T01 (Zea mays), 3'ss of exon 1
gtactgatactaattcgaactaaaacaatggcttcatttcagtattctt--gtatcaatcaaagcag-atgccttcttgtcacagGAAGCTGCTTCGTTAGGAGCAGTTGAAAGTATTTCCATGAAAGATACCCGTATTCTTGTTGATGCCCGAAAGTCAAAGATCTACACTGCGGAG
||| | ||  ||  |   | ||||  |||||||   |||||  ||   |  |||| ||||||||  | ||| ||||||||||||||| |||||||| ||||||||||||| ||| |||||||| ||||| ||||| ||| || |||||||  |||||| |||||||| ||| || |||
gtaattatgttatcttttattaaag-aatggctctgtttcaacatatgtaggtattaatcaaagttgcatggcttcttgtcacagGAGGCTGCTTCATTAGGAGCAGTTGCAAGCATTTCCATAAAAGAAACCCGGATTGTTATTGATGCTAGAAAGTTAAAGATCTTCACAGCCGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29678934|gb|CB675209.1|CB675209
EST:     TGTTGGAAGGTTTTGGTGAATACGACATTCGTGCCTTTTCAATACTGGAG                         GAAGCTGCTTCGTTAGGAGCAGTTGAAAGTATTTCCATGAAAGATACCCGT
genomic: TGTTGGAAGGTTTTGGTGAATACGACATTCGTGCCTTTTCAATACTGGAGgtactgatac ... cttgtcacagGAAGCTGCTTCGTTAGGAGCAGTTGAAAGTATTTCCATGAAAGATACCCGT
EST: gi|29614516|gb|CB619529.1|CB619529
EST:     TGCCTTTTCAATACTGGAG                         GAAGCTGCTTCGTTAGGAGCAGTTGAAAGTATTTCCATGAAAGATACCCGT
genomic: TGCCTTTTCAATACTGGAGgtactgatac ... cttgtcacagGAAGCTGCTTCGTTAGGAGCAGTTGAAAGTATTTCCATGAAAGATACCCGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atggcttcatttcagtattcttgtatcaatcaaagcagatgccttcttgtcacagGAAGCTGCTTCGTTAGGAGCAGTTGAAAGTATTTCCATGAAAGATACCCGTATTCTTGTTGATGCCCGAAAGTCAAAGATCTACACTGCGGAG
                                         ccttcttgtc  CT-rich tract
     ttcattt  TA-rich tract