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...aacaatggtcatacatttggtcaagcataaaaactttgtttgaagtatgtgatggtcgtgctgaccagtaaacattttaatctgatgattgtgtatgcagAACTCGATTCCCTTGGAAGAGAGCCAAGAATGTAGCTGGGCTCCAATTTTTGTTAGGCAGTCAAACTTCAAACTGCCTACTGATCCTACTGTGCCTATTA
species | Oryza sativa |
transcript | LOC_Os09g38620.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: AAGGATCCATAAAGGAGTTTGTTCTACTTGGATGAAG AACTCGATTCCCTTGGAAGAGAGCCAAGAATGTAGCTGGGCTCCAATTTTTEST: gi|27577734|gb|CB000429.1|CB000429
genomic: AAGGATCCATAAAGGAGTTTGTTCTACTTGGATGAAGgtaagccctt ... gtgtatgcagAACTCGATTCCCTTGGAAGAGAGCCAAGAATGTAGCTGGGCTCCAATTTTT
EST: GATCCATAAAGGAGTTTGTTCTACTTGGATGAAG AACTTTATTCCCTTGGAAGAGAGCCAAGAATGTAGCTGGGCTCCAATTTTTEST: gi|218481460|gb|FG955105.1|FG955105
genomic: GATCCATAAAGGAGTTTGTTCTACTTGGATGAAGgtaagccctt ... gtgtatgcagAACTCGATTCCCTTGGAAGAGAGCCAAGAATGTAGCTGGGCTCCAATTTTT
EST: AAACCCCTACTGGAAGGATCCATAAAGGAGTTTGTTCTACTTGGATGAAG AACTCGATTCCCTTGGAAGAGAGCCAAGAATGTAGCTGGGCTCCAATTTTT
genomic: AAACCCCTACTGGAAGGATCCATAAAGGAGTTTGTTCTACTTGGATGAAGgtaagccctt ... gtgtatgcagAACTCGATTCCCTTGGAAGAGAGCCAAGAATGTAGCTGGGCTCCAATTTTT
tatgtgatggtcgtgctgaccagtaaacattttaatctgatgattgtgtatgcagAACTCGATTCCCTTGGAAGAGAGCCAAGAATGTAGCTGGGCTCCAATTTTTGTTAGGCAGTCAAACTTCAAACTGCCTACTGATCCTACTGTGCCTATTA
agtaaacattttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacaatggtcatacatttggtcaagcataaaaactttgtttgaagtatgtgatggtcgtgctgaccagtaaacattttaatctgatgattgtgtatgcagAACTCGATTCCCTTGGAAGAGAGCCAAGAATGTAGCTGGGCTCCAATTTTTGTTAGGCAGTCAAACTTCAAACTGCCTACTGATCCTACTGTGCCTATTA
- - - - -catacat
- - - - - - - - - - -caagcat
- - - - - - - - - - - - - - - - - - tgtttga
- - - - - - - - - - - - - - - - - - - - - - - -tgtgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgatga