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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcagatattctcagttgtaattctttttggacattgcatctataatacatatttctcatagtccctgatataaatgaacttaatattgtcgtttgaatagGTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTT

Basic information

species Oryza sativa
transcript LOC_Os09g07830.1
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os09g07830.3 (Oryza sativa), 3'ss of exon 12
lower sequence: GRMZM5G866758_T01 (Zea mays), 3'ss of exon 12
tcagatattctcagttgtaattctttttggacattgcat--ctataatacatatttctcatagtccctgata-taaatgaacttaat-attgtcgtttg--aatagGTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTT--
     | ||||     | ||  | ||  | ||| |  |   | || ||         ||| | |   |  |  |  |    | |||| |||||   |||  || ||||||| |||| |||  ||||||| ||||||||||||||||| ||||| || |||||||||||||| ||||| ||||| ||||| |||||||||  ||   
-----ttttctttaa-gcaaaacgttgggcacaatatagtgccatcatgttgggacatcaaaatatattgtgcttgaccctcctaatcattgtttcttgttaacagGTTCTCAGGGCGAAGAGTGGCAAGATCGGAGTTGCTGGTGTCTGCAACGGTGGAGGCGGAGCATCAGCTCTTGTTCTGGAGCTCGCATAAGAAATCTAGA

upper sequence: LOC_Os09g07830.3 (Oryza sativa), 3'ss of exon 12
lower sequence: GRMZM2G085474_T04 (Zea mays), 3'ss of exon 13
-------------tcagatattctcagttgtaattctttttgg------acattgcatctata-atacatatttctcatagtccctgatataaatgaacttaa----------tattgtcgtttgaatagGTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTT--
             | ||||  | |   ||       || || |      ||| | | | | |  | |||| |      |  |  |||  | |||  || || |          | ||  | ||| || |||| |||||||| || || ||||| ||||| ||||||||||| ||||| |||||||| |||||||| ||||| |||||||| || ||||||||||| ||  
gtaagttttatcttaagatgctgtttttttctgactttcttagctagctacaatccctttgtttaaacatgtgcaaagtgttttctgtcagaaaaaaagttgaagctgacccttgtttcctttttaacagGTCCTTAGGGAAAAGGGCGGCAAGATCGGTGTTGCTGGTGTCTGCAACGGCGGAGGTGGAGCATCAGCTCTTGTTCTCGAACTCGCATAAGAAGCATTGG

upper sequence: LOC_Os09g07830.3 (Oryza sativa), 3'ss of exon 12
lower sequence: GLYMA17G00910.1 (Glycine max), 3'ss of exon 13
----------------------------------------------------------------------------------------tcagata-ttctcagttgtaattctttttggacattgcatctataatacatatttctcatagtccctgatataaatgaa-cttaatattgtcgtttgaatagGTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTT
                                                                                         ||   |  | | |    | |   ||| |     |||| |   |  ||||  || |  ||  |   |||| |      | ||||     || || | |  ||||  | ||| ||||  | || ||    || ||||| |   | |||||||| ||||| |||||||||||||| ||||| |||||               
gtaacatgtgaccttggttctttatatttcattttctttcacccttggcacacaaattcttatagttctctagttagtattctgtaagccatgcagctgttatccattacattttataattcttgcttgattgctacactttccagatt-tttgtgatctgtggatatcttagccaagttgtatta-cagGTATTGAGGCAGAAGAGAGGGAAGTATGGTGTTGCCGCCATCTGCAATGGGGGAGGAGGAGCATCTGCTCTTGTTCTTGAGCTCAT------------

upper sequence: LOC_Os09g07830.3 (Oryza sativa), 3'ss of exon 12
lower sequence: GLYMA17G00910.2 (Glycine max), 3'ss of exon 13
----------------------------------------------------------------------------------------tcagata-ttctcagttgtaattctttttggacattgcatctataatacatatttctcatagtccctgatataaatgaa-cttaatattgtcgtttgaatagGTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTT--
                                                                                         ||   |  | | |    | |   ||| |     |||| |   |  ||||  || |  ||  |   |||| |      | ||||     || || | |  ||||  | ||| ||||  | || ||    || ||||| |   | |||||||| ||||| |||||||||||||| ||||| |||||    ||||     ||  
gtaacatgtgaccttggttctttatatttcattttctttcacccttggcacacaaattcttatagttctctagttagtattctgtaagccatgcagctgttatccattacattttataattcttgcttgattgctacactttccagatt-tttgtgatctgtggatatcttagccaagttgtatta-cagGTATTGAGGCAGAAGAGAGGGAAGTATGGTGTTGCCGCCATCTGCAATGGGGGAGGAGGAGCATCTGCTCTTGTTCTTGAGCTCATGTAAGCCTTTTTAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|42592163|gb|CK738649.1|CK738649
EST:     GACATCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGGT                         GTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGC
genomic: GACATCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGGTgtaagtttta ... gtttgaatagGTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGC
EST: gi|86536502|gb|CI176708.1|CI176708
EST:     GACATCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGTT                         GTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGC
genomic: GACATCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGGTgtaagtttta ... gtttgaatagGTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGC
EST: gi|88256251|gb|CI358639.1|CI358639
EST:     GACATCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGGT                         GTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGC
genomic: GACATCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGGTgtaagtttta ... gtttgaatagGTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGC
EST: gi|88267020|gb|CI378955.1|CI378955
EST:     GACATCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGGT                         GTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGC
genomic: GACATCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGGTgtaagtttta ... gtttgaatagGTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGC
EST: gi|88278180|gb|CI399180.1|CI399180
EST:     ACATCCTCTTGGATCCAGTGGTGCTCGAATTTTTGGTCACCCTGCTT-GT                         N
genomic: ACATCCTCTTGGATGCAGTGGTGCTCGAA-TTTTGGTCACCCTGCTTGGTgtaagtttta ... gtttgaatag-
EST: gi|88278180|gb|CI399180.1|CI399180
EST:     ACATCCTCTTGGATCCAGTGGTGCTCGAATTTTTGGTCACCCTGCTT-GT                         N
genomic: ACATCCTCTTGGATGCAGTGGTGCTCGAA-TTTTGGTCACCCTGCTTGGTgtaagtttta ... gtttgaatag-
EST: gi|86867692|gb|CI342669.1|CI342669
EST:     GACATCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGGT                         GTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGC
genomic: GACATCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGGTgtaagtttta ... gtttgaatagGTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGC
EST: gi|88271010|gb|CI386865.1|CI386865
EST:     GACATCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGGT                         GTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGC
genomic: GACATCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGGTgtaagtttta ... gtttgaatagGTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGC
EST: gi|88270745|gb|CI386003.1|CI386003
EST:     GACATCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGGT                         GTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGC
genomic: GACATCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGGTgtaagtttta ... gtttgaatagGTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGC
EST: gi|88462858|gb|CI519770.1|CI519770
EST:     GACATCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGGT                         GTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGC
genomic: GACATCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGGTgtaagtttta ... gtttgaatagGTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGC
EST: gi|88959704|gb|CI002314.1|CI002314
EST:     GACATCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGGT                         GTTCTTAGGGAGAAAGGTGGCCAAATCGGAGTTGCTGGTGTTTGCAATGGC
genomic: GACATCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGGTgtaagtttta ... gtttgaatagGTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGC
EST: gi|88291122|gb|CI527512.1|CI527512
EST:     GACATCCTCTTGGATGCANTGGTGCTCGAATTTTGGTCACCCTGCTTGGT                         GTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGC
genomic: GACATCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGGTgtaagtttta ... gtttgaatagGTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGC
EST: gi|88273759|gb|CI394165.1|CI394165
EST:     TCGAATTTTGGTCACCCTGCTTGGT                         GTTC-TAGGGAGAAAGGTGGCAAAATGGGAG-TGCTGG-GTTTGCAATGGC
genomic: TCGAATTTTGGTCACCCTGCTTGGTgtaagtttta ... gtttgaatagGTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGC
EST: gi|86537651|gb|CI177857.1|CI177857
EST:     TGGTGCTCGAATTTTGGTCACCCTGCTTGGT                         GTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGC
genomic: TGGTGCTCGAATTTTGGTCACCCTGCTTGGTgtaagtttta ... gtttgaatagGTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGC
EST: gi|88522268|gb|CI450014.1|CI450014
EST:     GACATCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGGT                         GTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGC
genomic: GACATCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGGTgtaagtttta ... gtttgaatagGTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGC
EST: gi|88243342|gb|CI244464.1|CI244464
EST:     GACATCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGGT                         GTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGC
genomic: GACATCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGGTgtaagtttta ... gtttgaatagGTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGC
EST: gi|86412530|gb|CI066935.1|CI066935
EST:     GACATCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGGT                         GTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGC
genomic: GACATCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGGTgtaagtttta ... gtttgaatagGTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGC
EST: gi|88468574|gb|CI515056.1|CI515056
EST:     GACATCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGGT                         GTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGC
genomic: GACATCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGGTgtaagtttta ... gtttgaatagGTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGC
EST: gi|88319137|gb|CI513201.1|CI513201
EST:     GACATCCTCTTGGATGCANTGGTGCTCGAATTTTGGTCACCCTGCTTGGT                         GTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGC
genomic: GACATCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGGTgtaagtttta ... gtttgaatagGTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGC
EST: gi|88993566|gb|CI110387.1|CI110387
EST:     GACATCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGGT                         GTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGC
genomic: GACATCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGGTgtaagtttta ... gtttgaatagGTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGC
EST: gi|88436026|gb|CI516562.1|CI516562
EST:     GACATCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGGT                         GTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGC
genomic: GACATCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGGTgtaagtttta ... gtttgaatagGTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGC
EST: gi|29640958|gb|CB645965.1|CB645965
EST:     GACATCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGGT                         GTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGC
genomic: GACATCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGGTgtaagtttta ... gtttgaatagGTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGC
EST: gi|86498219|gb|CI140852.1|CI140852
EST:     GACATCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGGT                         GTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGC
genomic: GACATCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGGTgtaagtttta ... gtttgaatagGTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGC
EST: gi|88468140|gb|CI517599.1|CI517599
EST:     GACATCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGGT                         GTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGC
genomic: GACATCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGGTgtaagtttta ... gtttgaatagGTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGC
EST: gi|87020189|gb|CI259259.1|CI259259
EST:     GACATCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGGT                         GTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGC
genomic: GACATCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGGTgtaagtttta ... gtttgaatagGTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGC
EST: gi|88907680|gb|CI091078.1|CI091078
EST:     GACATCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGGT                         GTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGC
genomic: GACATCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGGTgtaagtttta ... gtttgaatagGTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGC
EST: gi|88265504|gb|CI376406.1|CI376406
EST:     GACATCCTCTT-GATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGGT                         TTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGC
genomic: GACATCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGGTgtaagtttta ... gtttgaatagGTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGC
EST: gi|88830971|gb|CI080395.1|CI080395
EST:     GACATCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGGT                         GTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGC
genomic: GACATCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGGTgtaagtttta ... gtttgaatagGTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGC
EST: gi|88906443|gb|CI375515.1|CI375515
EST:     GACATCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGGT                         GTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGC
genomic: GACATCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGGTgtaagtttta ... gtttgaatagGTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGC
EST: gi|88267537|gb|CI379472.1|CI379472
EST:     GACATCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGGT                         GTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGC
genomic: GACATCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGGTgtaagtttta ... gtttgaatagGTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGC
EST: gi|88839196|gb|CI378120.1|CI378120
EST:     GACATCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGGT                         GTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGC
genomic: GACATCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGGTgtaagtttta ... gtttgaatagGTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGC
EST: gi|5607308|gb|AU075980.1|AU075980
EST:     GACATCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCNCCCTGCTTGGT                         GTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGC
genomic: GACATCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGGTgtaagtttta ... gtttgaatagGTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGC
EST: gi|86431389|gb|CI085000.1|CI085000
EST:     GACATCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGGT                         GTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGC
genomic: GACATCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGGTgtaagtttta ... gtttgaatagGTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGC
EST: gi|88466571|gb|CI532378.1|CI532378
EST:     GACATCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGGT                         GTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGC
genomic: GACATCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGGTgtaagtttta ... gtttgaatagGTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGC
EST: gi|89182185|gb|CI113554.1|CI113554
EST:     GACATCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGGT                         GTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGC
genomic: GACATCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGGTgtaagtttta ... gtttgaatagGTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGC
EST: gi|89198029|gb|CI117507.1|CI117507
EST:     GACATCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGGT                         GTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGC
genomic: GACATCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGGTgtaagtttta ... gtttgaatagGTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGC
EST: gi|86486603|gb|CI129236.1|CI129236
EST:     GACATCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGGT                         GTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGC
genomic: GACATCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGGTgtaagtttta ... gtttgaatagGTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGC
EST: gi|88295383|gb|CI527746.1|CI527746
EST:     ANCATCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGGT                         GTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGC
genomic: A-CATCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGGTgtaagtttta ... gtttgaatagGTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacatatttctcatagtccctgatataaatgaacttaatattgtcgtttgaatagGTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTT
                                acttaat  putative branch site (score: 4)
                    tgatataaatgaactt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tcagatattctcagttgtaattctttttggacattgcatctataatacatatttctcatagtccctgatataaatgaacttaatattgtcgtttgaatagGTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC