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gtactactacatacattatatcacattaacattcctggtcgcataagattggcctttggtaatgaacatcgctgtaatccttttatcattgcagTACACGAAGCTCGTGTCCCCTGCATCAAGAGGATGCGTCACCGATGAGTAGATCCTGCTGCTGCTGCTCGAGTAATAAAAAATAAAAAATAAAAAAGAGG
species | Oryza sativa |
transcript | LOC_Os08g44530.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: GGAAATGGACGCCGCCGCCACACAAGGCTGCCCGTGGAGCGCTTTGGAAG TACACGAAGCTCGTGTCCCCTGCATCAAGAGGATGCGTCACCGATGAGTAGEST: gi|88830002|gb|CI074674.1|CI074674
genomic: GGAAATGGACGCCGCCGCCACACAAGGCTGCCCGTGGAGCGCTTTGGAAGgtactactac ... atcattgcagTACACGAAGCTCGTGTCCCCTGCATCAAGAGGATGCGTCACCGATGAGTAG
EST: GGAAATGGACGCCGCCGCCACACAAGGCTGCCCGTGGAGCGCTTTGGAAG TACACGAAGCTCGTGTCCCCTGCATCAAGAGGATGCGTCACCGATGAGTAGEST: gi|8858265|gb|AU095583.1|AU095583
genomic: GGAAATGGACGCCGCCGCCACACAAGGCTGCCCGTGGAGCGCTTTGGAAGgtactactac ... atcattgcagTACACGAAGCTCGTGTCCCCTGCATCAAGAGGATGCGTCACCGATGAGTAG
EST: GGAAATGGACGCCGCCGCCACACAAGGCTGCCCGTGGAGCGCTTTGGAAG TACACGAAGCTCGTGTCCCCTGCATCAAGAGGATGCGTCACCGATGAGTAGEST: gi|86255894|gb|CI068343.1|CI068343
genomic: GGAAATGGACGCCGCCGCCACACAAGGCTGCCCGTGGAGCGCTTTGGAAGgtactactac ... atcattgcagTACACGAAGCTCGTGTCCCCTGCATCAAGAGGATGCGTCACCGATGAGTAG
EST: GGAAATGGACGCCGCCGCCACACAAGGCTGCCCGTGGAGCGCTTTGGAAG TACACGAAGCTCGTGTCTCCTGCATCAAGAGGATGCGTCACCGATGAGTAGEST: gi|88965683|gb|CI006589.1|CI006589
genomic: GGAAATGGACGCCGCCGCCACACAAGGCTGCCCGTGGAGCGCTTTGGAAGgtactactac ... atcattgcagTACACGAAGCTCGTGTCCCCTGCATCAAGAGGATGCGTCACCGATGAGTAG
EST: GGAAATGGACGCCGCCGCCACACAAGGCTGCCCGTGGAGCGCTTTGGAAG TACACGAAGCTCGTGTCCCCCTGCATCAAGAGGATGCGTCACCGATGAGTAEST: gi|88971557|gb|CI017871.1|CI017871
genomic: GGAAATGGACGCCGCCGCCACACAAGGCTGCCCGTGGAGCGCTTTGGAAGgtactactac ... atcattgcagTACACGAAGCTCGTGTCCCC-TGCATCAAGAGGATGCGTCACCGATGAGTA
EST: GGAAATGGACGCCGCCGCCACACAAGGCTGCCCGTGGAGCGCTTTGGAAG TACACGAAGCTCGTGTCCC-TGCATCAAGAGGATGCGTCACCGATGAGTAGEST: gi|86823618|gb|CI258691.1|CI258691
genomic: GGAAATGGACGCCGCCGCCACACAAGGCTGCCCGTGGAGCGCTTTGGAAGgtactactac ... atcattgcagTACACGAAGCTCGTGTCCCCTGCATCAAGAGGATGCGTCACCGATGAGTAG
EST: GGAAATGGACGCCGCCGCCACACAAGGCTGCCCGTGGAGCGCTTTGGAAG TACACGAAT-TCGTGTCCC-TGCATCAAGAGGATGCGTCACCGATGAGTAGEST: gi|86428510|gb|CI075191.1|CI075191
genomic: GGAAATGGACGCCGCCGCCACACAAGGCTGCCCGTGGAGCGCTTTGGAAGgtactactac ... atcattgcagTACACGAAGCTCGTGTCCCCTGCATCAAGAGGATGCGTCACCGATGAGTAG
EST: GGAAATGGACGCCGCCGCCACACAAGGCTGCCCGTGGAGCGCTTTGGAAG TACACGAAGCTCGTGTCCCCTGCATCAAGAGGATGCGTCACCGATGAGTAGEST: gi|86537187|gb|CI177393.1|CI177393
genomic: GGAAATGGACGCCGCCGCCACACAAGGCTGCCCGTGGAGCGCTTTGGAAGgtactactac ... atcattgcagTACACGAAGCTCGTGTCCCCTGCATCAAGAGGATGCGTCACCGATGAGTAG
EST: GGAAATGGACGCCGCCGCCACACAAGGCTGCCCGTGGAGCGCTTTGGAAG TACACGATAGCTCGTGTCCCCTGCTATCAAGAGGATGCGTCACCGATGAGTEST: gi|89180557|gb|CI044836.1|CI044836
genomic: GGAAATGGACGCCGCCGCCACACAAGGCTGCCCGTGGAGCGCTTTGGAAGgtactactac ... atcattgcagTACACGA-AGCTCGTGTCCCCTGC-ATCAAGAGGATGCGTCACCGATGAGT
EST: GGAAATGGACGCCGCCGCCACACAAGGCTGCCCGTGGAGCGCTTTGGAAG TACACGAAGCTCGTGTCCCCTGCATCAAGAGGATGCGTCACCGATGAGTAGEST: gi|88848058|gb|CI086580.1|CI086580
genomic: GGAAATGGACGCCGCCGCCACACAAGGCTGCCCGTGGAGCGCTTTGGAAGgtactactac ... atcattgcagTACACGAAGCTCGTGTCCCCTGCATCAAGAGGATGCGTCACCGATGAGTAG
EST: GGAAATGGACGCCGCCGCCACACAAGGCTGCCCGTGGAGCGCTTTGGAAG TACACGAAGCTCGTGTCCCCTGCATCAAGAGGATGCGTCGCCGATGAGTAGEST: gi|88960472|gb|CI006433.1|CI006433
genomic: GGAAATGGACGCCGCCGCCACACAAGGCTGCCCGTGGAGCGCTTTGGAAGgtactactac ... atcattgcagTACACGAAGCTCGTGTCCCCTGCATCAAGAGGATGCGTCACCGATGAGTAG
EST: GGAAATGGACGCCGCCGCCACACAAGGCTGCCCGTGGAGCGCTTTGGAAG TACACGAAGCTCGTGTCCCCTGCATCAAGAGGATGCGTCACCGATGAGTAGEST: gi|5038803|gb|AU070913.1|AU070913
genomic: GGAAATGGACGCCGCCGCCACACAAGGCTGCCCGTGGAGCGCTTTGGAAGgtactactac ... atcattgcagTACACGAAGCTCGTGTCCCCTGCATCAAGAGGATGCGTCACCGATGAGTAG
EST: GGAAATGGACGCCGCCGCCACACAAGGCTGCCCGTGGAGCGCTTTGGAAG TACACGAAGCTCGTGTCCCCTGCATCAAGAGGATGCGTCACCGATGAGTEST: gi|86488131|gb|CI130764.1|CI130764
genomic: GGAAATGGACGCCGCCGCCACACAAGGCTGCCCGTGGAGCGCTTTGGAAGgtactactac ... atcattgcagTACACGAAGCTCGTGTCCCCTGCATCAAGAGGATGCGTCACCGATGAGT
EST: GGAAATGGACGCCGCCGCCACACAAGGCTGCCCGTGGAGCGCTTTGGAAG TACACGAAGCTCGTGTCCCCTGCATCAAGAGGATGCGTCACCGATGAGTAG
genomic: GGAAATGGACGCCGCCGCCACACAAGGCTGCCCGTGGAGCGCTTTGGAAGgtactactac ... atcattgcagTACACGAAGCTCGTGTCCCCTGCATCAAGAGGATGCGTCACCGATGAGTAG
cgcataagattggcctttggtaatgaacatcgctgtaatccttttatcattgcagTACACGAAGCTCGTGTCCCCTGCATCAAGAGGATGCGTCACCGATGAGTAGATCCTGCTGCTGCTGCTCGAGTAATAAAAAATAAAAAATAAAAAAGAGG
tccttttatc CT-rich tract
ttttatcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactactacatacattatatcacattaacattcctggtcgcataagattggcctttggtaatgaacatcgctgtaatccttttatcattgcagTACACGAAGCTCGTGTCCCCTGCATCAAGAGGATGCGTCACCGATGAGTAGATCCTGCTGCTGCTGCTCGAGTAATAAAAAATAAAAAATAAAAAAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG