1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...gataaaaaaaaaatgtcataaccttctaccgaactaccatttaaatcttgaggcccatctcaagtgtaaatatgaaacctttcctccttacatttatcagGTGCTGCAAGCTACCGTGATGAAGCAACTGGAAATTGCAGAATCAATAGAGGAAGTGATTAGGAGGCAGCTAAGG
species | Oryza sativa |
transcript | LOC_Os08g25310.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: CTTGGGATAGGATAAAATGTATCGAATCTGATCTCGAACGCACAAAGAAG GTGCTGCAAGCTACCGTGATGAAGCAACTGGAAATTGCAGAATCAATAGAGEST: gi|29682931|gb|CB679206.1|CB679206
genomic: CTTGGGATAGGATAAAATGTATCGAATCTGATCTCGAACGCACAAAGAAGgtaagatgat ... catttatcagGTGCTGCAAGCTACCGTGATGAAGCAACTGGAAATTGCAGAATCAATAGAG
EST: CTTGGGATAGGATAAAATGTATCGAATCTGATCTCGAACGCACAAAGAAG GTGCTGCAAGCTACCGTGATGAAGCAACTGGAAATTGCAGAATCAATAGAGEST: gi|29675315|gb|CB671590.1|CB671590
genomic: CTTGGGATAGGATAAAATGTATCGAATCTGATCTCGAACGCACAAAGAAGgtaagatgat ... catttatcagGTGCTGCAAGCTACCGTGATGAAGCAACTGGAAATTGCAGAATCAATAGAG
EST: CTTGGGATAGGATAAAATGTATCGAATCTGATCTCGAACGCACAAAGAAG GTGCTGCAAGCTACCGTGATGAAGCAACTGGAAATTGCAGAATCAATAGAG
genomic: CTTGGGATAGGATAAAATGTATCGAATCTGATCTCGAACGCACAAAGAAGgtaagatgat ... catttatcagGTGCTGCAAGCTACCGTGATGAAGCAACTGGAAATTGCAGAATCAATAGAG
tcttgaggcccatctcaagtgtaaatatgaaacctttcctccttacatttatcagGTGCTGCAAGCTACCGTGATGAAGCAACTGGAAATTGCAGAATCAATAGAGGAAGTGATTAGGAGGCAGCTAAGG
tccttac putative branch site (score: 5)
cctttcctccttacat CT-rich tract
taaatatgaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gataaaaaaaaaatgtcataaccttctaccgaactaccatttaaatcttgaggcccatctcaagtgtaaatatgaaacctttcctccttacatttatcagGTGCTGCAAGCTACCGTGATGAAGCAACTGGAAATTGCAGAATCAATAGAGGAAGTGATTAGGAGGCAGCTAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
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