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gtttgacttcaaattcactattactagttctatttaattactgaaagcaaacatttattggaaagatctcattggtattgttggcacctaatgtttcagATTTTGAGGGAGGAGGAATTTGCACCAGTAAAGAATGCTAATGGTGCAACTTATGATACTCCTGATAGTGCCAGATTAATGCTGCTCCGCCTTCACAGCC
species | Oryza sativa |
transcript | LOC_Os08g10600.3 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: GTTTATATTTGACGTGTTCACCTATTCTCCATCAACAGCTCTTTTTTGAG ATTTTGAGGGAGGAGGAATTTGCACCAGTAAAGAATGCTAATGGTGCAACEST: gi|29616665|gb|CB621677.1|CB621677
genomic: GTTTATATTTGACGTGTTCACCTATTCTCCATCAACAGCTC-TTTTTGAGgtttgacttc ... aatgtttcagATTTTGAGGGAGGAGGAATTTGCACCAGTAAAGAATGCTAATGGTGCAAC
EST: AGTTTATATTTGACGTGTTCACCTATTCTCCATCAACAGCTCTTTTTGAG ATTTTGAGGGAGGAGGAATTTGCACCAGTAAAGAATGCTAATGGTGCAACTEST: gi|29685401|gb|CB681676.1|CB681676
genomic: AGTTTATATTTGACGTGTTCACCTATTCTCCATCAACAGCTCTTTTTGAGgtttgacttc ... aatgtttcagATTTTGAGGGAGGAGGAATTTGCACCAGTAAAGAATGCTAATGGTGCAACT
EST: AGTTTATATTTGACGTGTTCACCTATTCTCCATCAACAGCTCTTTTTGAG ATTTTGAGGGAGGAGGAATTTGCACCAGTAAAGAATGCTAATGGTGCAACTEST: gi|218481588|gb|FG958598.1|FG958598
genomic: AGTTTATATTTGACGTGTTCACCTATTCTCCATCAACAGCTCTTTTTGAGgtttgacttc ... aatgtttcagATTTTGAGGGAGGAGGAATTTGCACCAGTAAAGAATGCTAATGGTGCAACT
EST: AACAGCTCTTTTTGAG ATTTTGAGGGAGGAGGAATTTGCACCAGTAAAGAATGCTAATGGTGCAACTEST: gi|29674853|gb|CB671128.1|CB671128
genomic: AACAGCTCTTTTTGAGgtttgacttc ... aatgtttcagATTTTGAGGGAGGAGGAATTTGCACCAGTAAAGAATGCTAATGGTGCAACT
EST: AGTTTATATTTGACGTGTTCACCTATTCTCCATCAACAGCTCTTTTTGAG ATTTTGAGGGAGGAGGAATTTGCACCAGTAAAGAATGCTAATGGTGCAACTEST: gi|8860129|gb|AU097447.1|AU097447
genomic: AGTTTATATTTGACGTGTTCACCTATTCTCCATCAACAGCTCTTTTTGAGgtttgacttc ... aatgtttcagATTTTGAGGGAGGAGGAATTTGCACCAGTAAAGAATGCTAATGGTGCAACT
EST: AGTTTATATTTGACGTGTTCACCTATTCTCCATCAACAGCTCTTTTTGAG ATTTTGAGGGAGGAGGAATTTGCACCAGTAAAGAATGCTAATGGTGCAACT
genomic: AGTTTATATTTGACGTGTTCACCTATTCTCCATCAACAGCTCTTTTTGAGgtttgacttc ... aatgtttcagATTTTGAGGGAGGAGGAATTTGCACCAGTAAAGAATGCTAATGGTGCAACT
aagcaaacatttattggaaagatctcattggtattgttggcacctaatgtttcagATTTTGAGGGAGGAGGAATTTGCACCAGTAAAGAATGCTAATGGTGCAACTTATGATACTCCTGATAGTGCCAGATTAATGCTGCTCCGCCTTCACAGCC
acctaat putative branch site (score: 3)
aacatttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgacttcaaattcactattactagttctatttaattactgaaagcaaacatttattggaaagatctcattggtattgttggcacctaatgtttcagATTTTGAGGGAGGAGGAATTTGCACCAGTAAAGAATGCTAATGGTGCAACTTATGATACTCCTGATAGTGCCAGATTAATGCTGCTCCGCCTTCACAGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT