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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtatcatttcaagccttcaaatataagacaggaagctttgtttttcctgcagttgagaacttattttttttaatcagGGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTCAAGGGGGCATAATAGAATAGATTGTGCTTTGTGTATTAGTATCCAGGAA

Basic information

species Oryza sativa
transcript LOC_Os08g01180.1
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g01180.1 (Oryza sativa), 3'ss of exon 13
lower sequence: GRMZM2G451366_T01 (Zea mays), 3'ss of exon 13
gtatgtatcatttcaa-gcct---tcaaatataagacaggaagctttgtttttcctgcagttgaga---acttattttttttaatcagGGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTCAAGGGGGCATAATAGAATAGATTGTGCTTTGTGTATTAGTATCCAGGAA---
||||| | ||||||   ||||   | |  |   | ||||   |||||    |  |||     ||     |  |   ||| ||   |||||| | || || ||||| |||||||||||||| || || ||||||||  |||||||||||||   |  ||| ||||| |||||||  ||| |     ||    
gtatggaccatttctttgcctggtttactttggatacagcttgctttcccgtgactgagaaagaagtacatgtgactttgttgggcagGGTGTCGACGACCTCATTAACATATTCCGGCGGCCTCCGTCACGCAAACTCAAGGGGGCATA---GGCTAGGTTGTGTTTTGTGTTCTAGAAGAAGAGATAGA

upper sequence: LOC_Os08g01180.1 (Oryza sativa), 3'ss of exon 13
lower sequence: GRMZM2G021784_T01 (Zea mays), 3'ss of exon 13
gtatgtatcatttcaagccttcaaata--taagacaggaag--ctttgtttttcctgcagttgagaacttatttttt--ttaatcagGGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTCAAGGGGGCATAATAGAATAGATTGTGCTTTGTGTATTAGTATCCAGGAA---
||||| || |||||    |||    ||  |  || || | |  |||||      ||| ||   ||  | |     ||  ||   |||||| ||||||||||||| |||||||||||||| || |||||||||||  ||||||| |||||   |  |||  |||| ||||||||||||   |    ||   
gtatggatgatttctttgcttggtttactttggatagaatgtgctttggcgcaactg-agaaaagtgcatgccacttgcttgggcagGGTGTTGATGATCTCATTAACATATTCCGGCGGCCTCCATCACGCAAACTCAAGGGTGCATA---GGCTAGGCTGTGTTTTGTGTATTAGCGCCAGCCAAGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88957695|gb|CI095469.1|CI095469
EST:     TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGG                         GGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
genomic: TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGGgtatgtatca ... ttttaatcagGGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
EST: gi|86841489|gb|CI336466.1|CI336466
EST:     TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGG                         GGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
genomic: TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGGgtatgtatca ... ttttaatcagGGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
EST: gi|88840257|gb|CI079711.1|CI079711
EST:     TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGG                         GGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
genomic: TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGGgtatgtatca ... ttttaatcagGGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
EST: gi|88996814|gb|CI389480.1|CI389480
EST:     TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGG                         GGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
genomic: TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGGgtatgtatca ... ttttaatcagGGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
EST: gi|86427164|gb|CI072261.1|CI072261
EST:     TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGG                         GGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
genomic: TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGGgtatgtatca ... ttttaatcagGGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
EST: gi|89164718|gb|CI101806.1|CI101806
EST:     TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGG                         GGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
genomic: TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGGgtatgtatca ... ttttaatcagGGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
EST: gi|86854636|gb|CI258929.1|CI258929
EST:     TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGG                         GGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
genomic: TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGGgtatgtatca ... ttttaatcagGGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
EST: gi|5004260|gb|AU069409.1|AU069409
EST:     TAGTAATCACTACACGG                         GGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
genomic: TAGTAATCACTACACGGgtatgtatca ... ttttaatcagGGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
EST: gi|88849067|gb|CI087589.1|CI087589
EST:     TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGG                         GGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
genomic: TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGGgtatgtatca ... ttttaatcagGGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
EST: gi|3760363|gb|C97617.1|C97617
EST:     TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGG                         GGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
genomic: TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGGgtatgtatca ... ttttaatcagGGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
EST: gi|218494749|gb|FG957718.1|FG957718
EST:     TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGG                         GGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAA
genomic: TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGGgtatgtatca ... ttttaatcagGGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAA
EST: gi|86482967|gb|CI125600.1|CI125600
EST:     TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGG                         GGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
genomic: TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGGgtatgtatca ... ttttaatcagGGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
EST: gi|88416583|gb|CI543484.1|CI543484
EST:     GGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGG                         GGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
genomic: GGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGGgtatgtatca ... ttttaatcagGGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
EST: gi|109712838|gb|CI105446.1|CI105446
EST:     TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGG                         GGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
genomic: TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGGgtatgtatca ... ttttaatcagGGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
EST: gi|89179920|gb|CI044199.1|CI044199
EST:     TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGG                         GGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
genomic: TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGGgtatgtatca ... ttttaatcagGGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
EST: gi|86485064|gb|CI127697.1|CI127697
EST:     TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGG                         GGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
genomic: TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGGgtatgtatca ... ttttaatcagGGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
EST: gi|88461197|gb|CI547377.1|CI547377
EST:     TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGG                         GGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
genomic: TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGGgtatgtatca ... ttttaatcagGGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
EST: gi|86844858|gb|CI337741.1|CI337741
EST:     TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGG                         GGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
genomic: TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGGgtatgtatca ... ttttaatcagGGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
EST: gi|86486989|gb|CI129622.1|CI129622
EST:     TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGG                         GGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
genomic: TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGGgtatgtatca ... ttttaatcagGGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
EST: gi|86484742|gb|CI127375.1|CI127375
EST:     TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGG                         GGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
genomic: TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGGgtatgtatca ... ttttaatcagGGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
EST: gi|88251510|gb|CI349938.1|CI349938
EST:     TT-GCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGG                         GGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACCCAAGGTC
genomic: TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGGgtatgtatca ... ttttaatcagGGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
EST: gi|88835730|gb|CI370835.1|CI370835
EST:     TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGG                         GGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
genomic: TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGGgtatgtatca ... ttttaatcagGGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
EST: gi|88448412|gb|CI555267.1|CI555267
EST:     TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGG                         GGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
genomic: TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGGgtatgtatca ... ttttaatcagGGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
EST: gi|88962033|gb|CI097186.1|CI097186
EST:     TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGG                         GGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
genomic: TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGGgtatgtatca ... ttttaatcagGGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
EST: gi|88322665|gb|CI542993.1|CI542993
EST:     CTAATTATTCTCTTCAGTTTCGTAGTAATCACTACACGG                         GGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
genomic: CTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGGgtatgtatca ... ttttaatcagGGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
EST: gi|11233402|gb|AU164814.1|AU164814
EST:     TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGG                         GGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
genomic: TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGGgtatgtatca ... ttttaatcagGGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
EST: gi|88413831|gb|CI528603.1|CI528603
EST:     TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGG                         GGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
genomic: TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGGgtatgtatca ... ttttaatcagGGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
EST: gi|88272905|gb|CI386165.1|CI386165
EST:     TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGG                         GGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGCTC
genomic: TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGGgtatgtatca ... ttttaatcagGGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
EST: gi|88296797|gb|CI540149.1|CI540149
EST:     TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGG                         GGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
genomic: TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGGgtatgtatca ... ttttaatcagGGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
EST: gi|86854626|gb|CI258919.1|CI258919
EST:     TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGG                         GGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
genomic: TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGGgtatgtatca ... ttttaatcagGGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
EST: gi|86489415|gb|CI132048.1|CI132048
EST:     TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGG                         GGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
genomic: TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGGgtatgtatca ... ttttaatcagGGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
EST: gi|86432595|gb|CI086206.1|CI086206
EST:     TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGG                         GGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
genomic: TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGGgtatgtatca ... ttttaatcagGGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
EST: gi|86425157|gb|CI070254.1|CI070254
EST:     TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGG                         GGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
genomic: TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGGgtatgtatca ... ttttaatcagGGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
EST: gi|29626679|gb|CB631690.1|CB631690
EST:     TGGCTCCTACCTAATGAGT-TGCTTCAGTTTCCTAGTAATCACTACACGG                         GGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
genomic: TGGCTCCTACCTAATTATTCT-CTTCAGTTTCCTAGTAATCACTACACGGgtatgtatca ... ttttaatcagGGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
EST: gi|86840128|gb|CI332752.1|CI332752
EST:     TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGG                         GGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
genomic: TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGGgtatgtatca ... ttttaatcagGGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
EST: gi|29627355|gb|CB632366.1|CB632366
EST:     TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGG                         GGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
genomic: TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGGgtatgtatca ... ttttaatcagGGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
EST: gi|86487055|gb|CI129688.1|CI129688
EST:     TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGG                         GGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
genomic: TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGGgtatgtatca ... ttttaatcagGGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
EST: gi|5004261|gb|AU069410.1|AU069410
EST:     AGTAATCACTACACGG                         GGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
genomic: AGTAATCACTACACGGgtatgtatca ... ttttaatcagGGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
EST: gi|89195954|gb|CI395372.1|CI395372
EST:     TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGG                         GGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
genomic: TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGGgtatgtatca ... ttttaatcagGGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
EST: gi|88956010|gb|CI092298.1|CI092298
EST:     TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGG                         GGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
genomic: TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGGgtatgtatca ... ttttaatcagGGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
EST: gi|58662499|gb|CK051185.1|CK051185
EST:     TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGG                         GGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
genomic: TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGGgtatgtatca ... ttttaatcagGGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
EST: gi|88846566|gb|CI373334.1|CI373334
EST:     TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGG                         GGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
genomic: TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGGgtatgtatca ... ttttaatcagGGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
EST: gi|86535737|gb|CI175943.1|CI175943
EST:     TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGG                         GGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
genomic: TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGGgtatgtatca ... ttttaatcagGGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
EST: gi|58674181|gb|CK062867.1|CK062867
EST:     TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGG                         GGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
genomic: TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGGgtatgtatca ... ttttaatcagGGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
EST: gi|88514735|gb|CI442241.1|CI442241
EST:     TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGG                         GGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
genomic: TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGGgtatgtatca ... ttttaatcagGGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
EST: gi|29613550|gb|CB618563.1|CB618563
EST:     TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGG                         GGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
genomic: TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGGgtatgtatca ... ttttaatcagGGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
EST: gi|88366340|gb|CI553738.1|CI553738
EST:     TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGG                         GGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
genomic: TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGGgtatgtatca ... ttttaatcagGGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
EST: gi|86887659|gb|CI311942.1|CI311942
EST:     TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGG                         GGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
genomic: TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGGgtatgtatca ... ttttaatcagGGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
EST: gi|86483664|gb|CI126297.1|CI126297
EST:     TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGG                         GGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
genomic: TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGGgtatgtatca ... ttttaatcagGGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
EST: gi|87017996|gb|CI275810.1|CI275810
EST:     TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGG                         GGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
genomic: TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGGgtatgtatca ... ttttaatcagGGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
EST: gi|88266073|gb|CI376975.1|CI376975
EST:     TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGG                         GGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
genomic: TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGGgtatgtatca ... ttttaatcagGGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
EST: gi|88450376|gb|CI544498.1|CI544498
EST:     TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGG                         GGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC
genomic: TTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGGgtatgtatca ... ttttaatcagGGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 74 (upstream exon), 41 (downstream exon)
Score: 7

GTTGCAAGTGTTACTTTTGATTTACTGTTCCTTCTGGTGATTGGCTCCTACCTAATTATTCTCTTCAGTTTCCTAGTAATCACTACACGGgtatgtatca ... ttttaatcagGGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTCAAGGGGGCATAATAGAATAGATTGTGCTTTGTGTATTAGTATCCAGGAA




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataagacaggaagctttgtttttcctgcagttgagaacttattttttttaatcagGGTCTTGATGATCTCATCAACATATTCCGGCGACCACCATCACGCAAGGTCAAGGGGGCATAATAGAATAGATTGTGCTTTGTGTATTAGTATCCAGGAA
                                     cttatttttttt  CT-rich tract
                              ttgagaacttattttt  TA-rich tract