1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...cctttaatatatccctctaatccccactctactttttttttaaaaaaagatgcaattatttactccgcttctgctaaccacgaattttcgacataaccagGTACTGGTTCCAAACCCCTGAAGCATGGACGATCGACGGCCACTACAGGTCGCTGATATACATGCGGCCCCTTGCAATCTGGGCAATGCAGTATGCATTG
species | Oryza sativa |
transcript | LOC_Os07g26210.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: ACTACTGCAGAAGGCATTTTCACCGCAGGATGGTCCGAAGAAGGCTATGG GTACTGGTTCCAAACCCCTGAAGCATGGACGATCGACGGCCACTACAGGTCEST: gi|29662663|gb|CB658938.1|CB658938
genomic: ACTACTGCAGAAGGCATTTTCACCGCAGGATGGTCCGAAGAAGGCTATGGgtatgccctc ... acataaccagGTACTGGTTCCAAACCCCTGAAGCATGGACGATCGACGGCCACTACAGGTC
EST: ACTACTGCAGAAGGCATTTTCACCGCAGGATGGTCCGAAGAAGGCTATGG GTACTGGTTCCAAACCCCTGAAGCATGGACGATCGACGGCCACTACAGGTCEST: gi|86427031|gb|CI072128.1|CI072128
genomic: ACTACTGCAGAAGGCATTTTCACCGCAGGATGGTCCGAAGAAGGCTATGGgtatgccctc ... acataaccagGTACTGGTTCCAAACCCCTGAAGCATGGACGATCGACGGCCACTACAGGTC
EST: ACTACTGCAGAAGGCATTTTCACCGCAGGATGGTCCGAAGAAGGCTATGG GTACTGGTTCCAAACCCCTGAAGCATGGACGATCGACGGCCACTACAGGTCEST: gi|29671834|gb|CB668109.1|CB668109
genomic: ACTACTGCAGAAGGCATTTTCACCGCAGGATGGTCCGAAGAAGGCTATGGgtatgccctc ... acataaccagGTACTGGTTCCAAACCCCTGAAGCATGGACGATCGACGGCCACTACAGGTC
EST: ACTACTGCAGAAGGCATTTTCACCGCAGGATGGTCCGAAGAAGGCTATGG GTACTGGTTCCAAACCCCTGAAGCATGGACGATCGACGGCCACTACAGGTC
genomic: ACTACTGCAGAAGGCATTTTCACCGCAGGATGGTCCGAAGAAGGCTATGGgtatgccctc ... acataaccagGTACTGGTTCCAAACCCCTGAAGCATGGACGATCGACGGCCACTACAGGTC
aaagatgcaattatttactccgcttctgctaaccacgaattttcgacataaccagGTACTGGTTCCAAACCCCTGAAGCATGGACGATCGACGGCCACTACAGGTCGCTGATATACATGCGGCCCCTTGCAATCTGGGCAATGCAGTATGCATTG
tgctaac putative branch site (score: 16)
aattatttact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cctttaatatatccctctaatccccactctactttttttttaaaaaaagatgcaattatttactccgcttctgctaaccacgaattttcgacataaccagGTACTGGTTCCAAACCCCTGAAGCATGGACGATCGACGGCCACTACAGGTCGCTGATATACATGCGGCCCCTTGCAATCTGGGCAATGCAGTATGCATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - gatgcaa