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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgtgctttctattcttttgcatgtccccatataatgcataattatagacatgcatcttcattatgattttattcaagtgtattccttaattcctgcttacGTGATTCAAGAGCTGTACTGTTGCATCAGCTCTCTAAGAAGCATTCGCATCATCCTTTCCGTAAATTGCCAGGCCTTCCTATTGCAGCAGTGTTTCATCC

Basic information

species Oryza sativa
transcript LOC_Os07g25440.2
intron # 13
splice site 3'
intron type U12 (go to U12 genes for details)

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88354185|gb|CI637751.1|CI637751
EST:     TGTACAGTGGCATTTCAAGGGAGACTATTTCACCACAGTTGTGCCAAGTG                         GTGATTCAAGAGCTGTACTGTTGCATCAGCTCTCTAAGAAGCATTCGCATC
genomic: TGTAGAGTGGCATTTCAAGGGAGACTATTTCACCACAGTTGTGCCAAGTGatatccttta ... tcctgcttacGTGATTCAAGAGCTGTACTGTTGCATCAGCTCTCTAAGAAGCATTCGCATC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agacatgcatcttcattatgattttattcaagtgtattccttaattcctgcttacGTGATTCAAGAGCTGTACTGTTGCATCAGCTCTCTAAGAAGCATTCGCATCATCCTTTCCGTAAATTGCCAGGCCTTCCTATTGCAGCAGTGTTTCATCC
                                    ttccttaat  putative branch site 
 ttcctgctt  CT-rich tract
 ttcattatgattttat  TA-rich tract