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gtgagatgcctgtttatctactgtttgcaggagccttagagtaaagcatcttttttattgcttatttatgccttcgttgatggtagGAGTATGACACGTGGGCCCACAGCTAACAGTCAGTGGATTTATGACTCACCTGTTAACTCAGAGGTGGAGTCTAAACTGCGGAACCTTCTGCTTGAGTTG
species | Oryza sativa |
transcript | LOC_Os06g48770.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: ATAGTTTATCTAGACATCATGAGGCCATTTGCTGAATCAACTTTGCTAGG GAGTATGACACGTGGGCCCACAGCTAACAGTCAGTGGATTTATGACTCAGCEST: gi|29679895|gb|CB676170.1|CB676170
genomic: ATAGTTTATCTAGACATCATGAGGCCATTTGCTGAATCAACTTTGCTAGGgtgagatgcc ... ttgatggtagGAGTATGACACGTGGGCCCACAGCTAACAGTCAGTGGATTTATGACTCACC
EST: ATAGTTTATCTAGACATCATGAGGCCATTTGCTGAATCAACTTTGCTAGG GAGTATGACACGTGGGCCCACAGCTAACAGTCAGTGGATTTATGACTCACCEST: gi|58590136|gb|CF988444.1|CF988444
genomic: ATAGTTTATCTAGACATCATGAGGCCATTTGCTGAATCAACTTTGCTAGGgtgagatgcc ... ttgatggtagGAGTATGACACGTGGGCCCACAGCTAACAGTCAGTGGATTTATGACTCACC
EST: ATAGTTTATCTAGACATCATGAGGCCATTTGCTGAATCAACTTTGCTAGG GAGTATGACACGTGGGCCCACAGCTAACAGTCAGTGGATTTATGACTCACCEST: gi|87005733|gb|CI316152.1|CI316152
genomic: ATAGTTTATCTAGACATCATGAGGCCATTTGCTGAATCAACTTTGCTAGGgtgagatgcc ... ttgatggtagGAGTATGACACGTGGGCCCACAGCTAACAGTCAGTGGATTTATGACTCACC
EST: TAGTTTATCTAGACATCATGAGGCCATTTCCTGAATCAACTTTGCCTAGG GAGTATGACACGTGGGCCCACAGCTAACAGTCAGTGGATTTATGACTCAC
genomic: TAGTTTATCTAGACATCATGAGGCCATTTGCTGAATCAACTTTG-CTAGGgtgagatgcc ... ttgatggtagGAGTATGACACGTGGGCCCACAGCTAACAGTCAGTGGATTTATGACTCAC
agccttagagtaaagcatcttttttattgcttatttatgccttcgttgatggtagGAGTATGACACGTGGGCCCACAGCTAACAGTCAGTGGATTTATGACTCACCTGTTAACTCAGAGGTGGAGTCTAAACTGCGGAACCTTCTGCTTGAGTTG
cgttgat putative branch site (score: 5)
ccttcgtt CT-rich tract
atcttttttattgctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagatgcctgtttatctactgtttgcaggagccttagagtaaagcatcttttttattgcttatttatgccttcgttgatggtagGAGTATGACACGTGGGCCCACAGCTAACAGTCAGTGGATTTATGACTCACCTGTTAACTCAGAGGTGGAGTCTAAACTGCGGAACCTTCTGCTTGAGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG