1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtgagcatccacttaatggcataacgccttagccagcccttttcagaacctattcgttttcctgattactgcagaaactgaatgtttcatacgcaactcgtgtgttccaaatggtgccttgcatgtattttttccatctatctttatctgacctgaagattttgtttctttgctccagCAACCGGGTCTTGGATTTGATCGGGCACATGGCTCTCGTCAACGCTAAGCCCTGATGCCATTGATAACAGCAGATGCCCTAGTAATGTAGGAAGAGAAGG
species | Oryza sativa |
transcript | LOC_Os06g45590.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: TCTTCTTTCATGAAGCTCGTCTCTTGGTACGACAACGAGTGGGGCTACAG CAACCGGGTCTTGGATTTGATCGGGCACATGGCTCTCGTCAACGCTAAGCCEST: gi|86497541|gb|CI140174.1|CI140174
genomic: TCTTCTTTCATGAAGCTCGTCTCTTGGTACGACAACGAGTGGGGCTACAGgtgagcatcc ... tttgctccagCAACCGGGTCTTGGATTTGATCGGGCACATGGCTCTCGTCAACGCTAAGCC
EST: TCTTCTTTCATGAAGCTCGTCTCTTGGTACGACAACGAGTGGGGCTACAG CAACCGGGTCTTGGATTTGATCGGGCACATGGCTCTCGTCAACGCTAAGCCEST: gi|87014965|gb|CI271564.1|CI271564
genomic: TCTTCTTTCATGAAGCTCGTCTCTTGGTACGACAACGAGTGGGGCTACAGgtgagcatcc ... tttgctccagCAACCGGGTCTTGGATTTGATCGGGCACATGGCTCTCGTCAACGCTAAGCC
EST: TCTTCTTTCATGAAGCTCGTCTCTTGGTACGACAACGAGTGGGGCTACAG CAACCGGGTCTTGGATTTGATCGGGCACATGGCTCTCGTCAACGCTAAGCCEST: gi|86597129|gb|CI272724.1|CI272724
genomic: TCTTCTTTCATGAAGCTCGTCTCTTGGTACGACAACGAGTGGGGCTACAGgtgagcatcc ... tttgctccagCAACCGGGTCTTGGATTTGATCGGGCACATGGCTCTCGTCAACGCTAAGCC
EST: TCTTCTTTCATGAAGCTCGTCTCTTGGTACGACAACGAGTGGGGCTACAG CAACCGGGTCTTGGATTTGATCGGGCACATGGCTCTCGTCAACGCTAAGCCEST: gi|29641580|gb|CB646587.1|CB646587
genomic: TCTTCTTTCATGAAGCTCGTCTCTTGGTACGACAACGAGTGGGGCTACAGgtgagcatcc ... tttgctccagCAACCGGGTCTTGGATTTGATCGGGCACATGGCTCTCGTCAACGCTAAGCC
EST: TCTTCTTTCATGAAGCTCGTCTCTTGGTACGACAACGAGTGGGGCTACAG CAACCGGGTCTTGGATTTGATCGGGCACATGGCTCTCGTCAACGATAAGCCEST: gi|29641807|gb|CB646814.1|CB646814
genomic: TCTTCTTTCATGAAGCTCGTCTCTTGGTACGACAACGAGTGGGGCTACAGgtgagcatcc ... tttgctccagCAACCGGGTCTTGGATTTGATCGGGCACATGGCTCTCGTCAACGCTAAGCC
EST: TCTTCTTTCATGAAGCTCGTCTCTTGGTACGACAACGAGTGGGGCTACAG CAACCGGGTCTTGGATTTGATCGGGCACATGGCTCTCGTCAACGCTAAGCCEST: gi|29641535|gb|CB646542.1|CB646542
genomic: TCTTCTTTCATGAAGCTCGTCTCTTGGTACGACAACGAGTGGGGCTACAGgtgagcatcc ... tttgctccagCAACCGGGTCTTGGATTTGATCGGGCACATGGCTCTCGTCAACGCTAAGCC
EST: TCTTCTTTCATGAAGCTCGTCTCTTGGTACGACAACGAGTGGGGCTACAG CAACCGGGTCTTGGATTTGATCGGGCACATGGCTCTCGTCAACGCTAAGCCEST: gi|88485781|gb|CI423052.1|CI423052
genomic: TCTTCTTTCATGAAGCTCGTCTCTTGGTACGACAACGAGTGGGGCTACAGgtgagcatcc ... tttgctccagCAACCGGGTCTTGGATTTGATCGGGCACATGGCTCTCGTCAACGCTAAGCC
EST: TCTTCTTTCATGAAGCTCGTCTCTTGGTACGACAACGAGTGGGGCTACAG CAACCGGGTCTTGGATTTGATCGGGCACATGGCTCTCGTCAACGCTAAGCC
genomic: TCTTCTTTCATGAAGCTCGTCTCTTGGTACGACAACGAGTGGGGCTACAGgtgagcatcc ... tttgctccagCAACCGGGTCTTGGATTTGATCGGGCACATGGCTCTCGTCAACGCTAAGCC
tgtattttttccatctatctttatctgacctgaagattttgtttctttgctccagCAACCGGGTCTTGGATTTGATCGGGCACATGGCTCTCGTCAACGCTAAGCCCTGATGCCATTGATAACAGCAGATGCCCTAGTAATGTAGGAAGAGAAGG
atctgac putative branch site (score: 1)
ttttgtttctttgctc putative PPT
tatctttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagcatccacttaatggcataacgccttagccagcccttttcagaacctattcgttttcctgattactgcagaaactgaatgtttcatacgcaactcgtgtgttccaaatggtgccttgcatgtattttttccatctatctttatctgacctgaagattttgtttctttgctccagCAACCGGGTCTTGGATTTGATCGGGCACATGGCTCTCGTCAACGCTAAGCCCTGATGCCATTGATAACAGCAGATGCCCTAGTAATGTAGGAAGAGAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA