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...tacctactgaacctctcaaactagtgacattgctttgtccctgacaacaacggaaattttctattagatctcaatctcatcatttgttctggaactgtagAGCATGACGCTACGGGCCTTGGCAACACCACTGAGACGGATACGAAGGAAACCGCTCGCTATACCAAAGGAGAGGAAGAATCGATCTCTATGGAAGAGGC
species | Oryza sativa |
transcript | LOC_Os06g40730.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: ATGGATCATCCCTAGGCGAGCGCCCTGAAATTCCTAGTCATGCGGGTAAG AGCATGACGCTACGGGCCTTGGCAACACCACTGAGACGGATACGAAGGAAAEST: gi|88671997|gb|CI726113.1|CI726113
genomic: ATGGATCATCCCTAGGCGAGCGCCCTGAAATTCCTAGTCATAAGCATAAGgtatgtcttc ... ggaactgtagAGCATGACGCTACGGGCCTTGGCAACACCACTGAGACGGATACGAAGGAAA
EST: ATGGATCATCCCTAGGCGAGCGCCCTGAAATTCCTAGTCATAAGCATAAG AGCATGACGCTACGGGCCCTTGGCAACACCACTGAGAAGGATEST: gi|89172448|gb|CI721507.1|CI721507
genomic: ATGGATCATCCCTAGGCGAGCGCCCTGAAATTCCTAGTCATAAGCATAAGgtatgtcttc ... ggaactgtagAGCATGACGCTACGGGCC-TTGGCAACACCACTGAGACGGAT
EST: ATGGATCATCCCTAGGCGAGCGCCCTGAAATTCCTAGTCATAAGCATAAG AGCATGACGCTNA-GGGCCTTGGCAAEST: gi|88671150|gb|CI725266.1|CI725266
genomic: ATGGATCATCCCTAGGCGAGCGCCCTGAAATTCCTAGTCATAAGCATAAGgtatgtcttc ... ggaactgtagAGCATGACGCT-ACGGGCCTTGGCAA
EST: ATGGATCATCCCTAGGCGAGCGCCCTGAAATTCCTAGTCATAAGCATAAG AGCATGACNGCTA-GGGCCTTGGCAACACCEST: gi|88674443|gb|CI728556.1|CI728556
genomic: ATGGATCATCCCTAGGCGAGCGCCCTGAAATTCCTAGTCATAAGCATAAGgtatgtcttc ... ggaactgtagAGCATGAC-GCTACGGGCCTTGGCAACACC
EST: ATGGATCATCCCTAGGCGAGCGCCCTGAAATTCCTAGTCATAAGCATAAG AGCATGACGCTACGGGCCTTGGCAACACCATTGAGAAGGATAEST: gi|88672670|gb|CI726786.1|CI726786
genomic: ATGGATCATCCCTAGGCGAGCGCCCTGAAATTCCTAGTCATAAGCATAAGgtatgtcttc ... ggaactgtagAGCATGACGCTACGGGCCTTGGCAACACCACTGAGACGGATA
EST: ATGGATCATCCCTAGGCGAGCGCCCTGAAATTCCTAGTCATAAGCATAAG AGCATGACGCTACGGGCCTTGGCAACACCACTGAGAAGGATACGAAGGAAAEST: gi|88673380|gb|CI727493.1|CI727493
genomic: ATGGATCATCCCTAGGCGAGCGCCCTGAAATTCCTAGTCATAAGCATAAGgtatgtcttc ... ggaactgtagAGCATGACGCTACGGGCCTTGGCAACACCACTGAGACGGATACGAAGGAAA
EST: ATGGATCATCCCTAGGCGAGCGCCCTGAAATTCCTAGTCATAAGCATAAG AGCATGACGCTACGGGCCTTGGCAACACCACTGEST: gi|29629190|gb|CB634201.1|CB634201
genomic: ATGGATCATCCCTAGGCGAGCGCCCTGAAATTCCTAGTCATAAGCATAAGgtatgtcttc ... ggaactgtagAGCATGACGCTACGGGCCTTGGCAACACCACTG
EST: ATGGATCATCCCTAGGCGAGCGCCCTGAAATTCCTAGTCATAAGCATAAG AGCATGACGCTACGGGCCTTGGCAACACCACTGAGACGGATACGAAGGAAAEST: gi|88667182|gb|CI719318.1|CI719318
genomic: ATGGATCATCCCTAGGCGAGCGCCCTGAAATTCCTAGTCATAAGCATAAGgtatgtcttc ... ggaactgtagAGCATGACGCTACGGGCCTTGGCAACACCACTGAGACGGATACGAAGGAAA
EST: ATGGATCATCCCTAGGCGAGCGCCCTGAAATTCCTAGTCATAAGCATAAG AGCATGACGCTACGGGCCTTGGCAACACCACTGAGACGGATACGAAGGAAAEST: gi|88677007|gb|CI731120.1|CI731120
genomic: ATGGATCATCCCTAGGCGAGCGCCCTGAAATTCCTAGTCATAAGCATAAGgtatgtcttc ... ggaactgtagAGCATGACGCTACGGGCCTTGGCAACACCACTGAGACGGATACGAAGGAAA
EST: ATGGATCATCCCTAGGCGAGCGCCCTGAAATTCCTAGTCATAAGCATAAG AGCATGACGCTACGGEST: gi|29616357|gb|CB621369.1|CB621369
genomic: ATGGATCATCCCTAGGCGAGCGCCCTGAAATTCCTAGTCATAAGCATAAGgtatgtcttc ... ggaactgtagAGCATGACGCTACGG
EST: ATGGATCATCCCTAGGCGAGCGCCCTGAAATTCCTAGTCATAAGCATAAG AGCATGACGCTACGGGCCTTGGCAACACCACTGAGACGGATACGAAGGAAAEST: gi|88908563|gb|CI713121.1|CI713121
genomic: ATGGATCATCCCTAGGCGAGCGCCCTGAAATTCCTAGTCATAAGCATAAGgtatgtcttc ... ggaactgtagAGCATGACGCTACGGGCCTTGGCAACACCACTGAGACGGATACGAAGGAAA
EST: ATGGATCATCCCTAGGCGAGCGCCCTGAAATTCCTAGTCATAAGCATAAG AGCATGACGCTACGGGCCTEST: gi|88673085|gb|CI727200.1|CI727200
genomic: ATGGATCATCCCTAGGCGAGCGCCCTGAAATTCCTAGTCATAAGCATAAGgtatgtcttc ... ggaactgtagAGCATGACGCTACGGGCCT
EST: ATGGATCATCCCTAGGCGAGCGCCCTGAAATTCCTAGTCATAAGCATAAG AGCATGACGCTACGGGCCTTGGCAACACCACTGAGEST: gi|88593829|gb|CI713783.1|CI713783
genomic: ATGGATCATCCCTAGGCGAGCGCCCTGAAATTCCTAGTCATAAGCATAAGgtatgtcttc ... ggaactgtagAGCATGACGCTACGGGCCTTGGCAACACCACTGAG
EST: ATGGATCATCCCTAGGCGAGCGCCCTGAAATTCCTAGTCATAAGCATAAG AGCATGACGCTACGGGCCTTGGCAACACCACEST: gi|88673190|gb|CI727304.1|CI727304
genomic: ATGGATCATCCCTAGGCGAGCGCCCTGAAATTCCTAGTCATAAGCATAAGgtatgtcttc ... ggaactgtagAGCATGACGCTACGGGCCTTGGCAACACCAC
EST: ATGGATCATCCCTAGGCGAGCGCCCTGAAATTCCTAGTCATAAGCATAAG AGCATGACGCTACGGGCCTTGGCAAEST: gi|88669516|gb|CI723434.1|CI723434
genomic: ATGGATCATCCCTAGGCGAGCGCCCTGAAATTCCTAGTCATAAGCATAAGgtatgtcttc ... ggaactgtagAGCATGACGCTACGGGCCTTGGCAA
EST: ATGGATCATCCCTAGGCGAGCGCCCTGAAATTCCTAGTCATAAGCATAAG AGCATGACGCTACGGGCCTTGGCAACA
genomic: ATGGATCATCCCTAGGCGAGCGCCCTGAAATTCCTAGTCATAAGCATAAGgtatgtcttc ... ggaactgtagAGCATGACGCTACGGGCCTTGGCAACA
aacaacggaaattttctattagatctcaatctcatcatttgttctggaactgtagAGCATGACGCTACGGGCCTTGGCAACACCACTGAGACGGATACGAAGGAAACCGCTCGCTATACCAAAGGAGAGGAAGAATCGATCTCTATGGAAGAGGC
aaattttctattagat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacctactgaacctctcaaactagtgacattgctttgtccctgacaacaacggaaattttctattagatctcaatctcatcatttgttctggaactgtagAGCATGACGCTACGGGCCTTGGCAACACCACTGAGACGGATACGAAGGAAACCGCTCGCTATACCAAAGGAGAGGAAGAATCGATCTCTATGGAAGAGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- cctactg
- - - - - - - - - - - - - - -ttgcttt
- - - - - - - - - - - - - - - - - - gtccctg
- - - - - - - - - - - - - - - - - - - - - - caacaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgttct