1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
gtttgttctaaccaactttgtttaaaacctgattccagatgcagatctactactactaagatattatttacatttacatttcacctaataacagtgataattttgcagagacaactaactctatattgcaacatgattcccttttacctaatacattttcatttcatttattcagGTTGACGTTATTACTACAATTGGCTACTTAAGAGGTGCTCCAAAACTGGATATACATGGATTTAATGTCTACCACAAGAACCGCCTTATACTG
species | Oryza sativa |
transcript | LOC_Os06g28060.2 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: AATGCATCAAATATCGCCCTCAAGTTGGAATAAACATAGAG GTTGACGTTATTACTACAATTGGCTACTTAAGAGGTGCTCCAAAACTGGATEST: gi|218482730|gb|FG951689.1|FG951689
genomic: AATGCATCAAATATCGACCACAAGTTGGAATAAACATAGAGgtttgttcta ... atttattcagGTTGACGTTATTACTACAATTGGCTACTTAAGAGGTGCTCCAAAACTGGAT
EST: TATACTGTGAATGCATCAAATATCGACCACAAGTTGGAATAAACATAGAG GTTGACGTTATTACTACAATTGGCTACTTAAGAGGTGCTCCAAAACTGGATEST: gi|38476867|gb|CF961000.1|CF961000
genomic: TATACTGTGAATGCATCAAATATCGACCACAAGTTGGAATAAACATAGAGgtttgttcta ... atttattcagGTTGACGTTATTACTACAATTGGCTACTTAAGAGGTGCTCCAAAACTGGAT
EST: TATACTGTGAATGCATCAAATATCGACCACAAGTTGGAATAAACATAGAG GTTGACGTTATTAC
genomic: TATACTGTGAATGCATCAAATATCGACCACAAGTTGGAATAAACATAGAGgtttgttcta ... atttattcagGTTGACGTTATTAC
ctatattgcaacatgattcccttttacctaatacattttcatttcatttattcagGTTGACGTTATTACTACAATTGGCTACTTAAGAGGTGCTCCAAAACTGGATATACATGGATTTAATGTCTACCACAAGAACCGCCTTATACTG
acctaat putative branch site (score: 3)
ttttcatttcattt putative PPT
taatacattttcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgttctaaccaactttgtttaaaacctgattccagatgcagatctactactactaagatattatttacatttacatttcacctaataacagtgataattttgcagagacaactaactctatattgcaacatgattcccttttacctaatacattttcatttcatttattcagGTTGACGTTATTACTACAATTGGCTACTTAAGAGGTGCTCCAAAACTGGATATACATGGATTTAATGTCTACCACAAGAACCGCCTTATACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC